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Publication研究業績

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研究業績 Publication Records (2010 年以降.すべて査読あり.以前の所属での業績も含まれます)
Year: 2023 2022 2021 2020 2019 2018 2017 2016 2015 2014 2013 2012 2011 2010 書籍・総説など 受賞など
2024 年

Structural Analyses of Designed α-Helix and β-Sheet Peptide Nanofibers Using Solid-State Nuclear Magnetic Resonance and Cryo-Electron Microscopy and Introduction of Structure-Based Metal-Responsive Properties
Nakagawa S, Kurokawa M, Kambawa O, Takei T, Daidoji K, Naito A, Takita M, Kawamoto A, Hirose M, Tamura A
Int J Mol Sci. 25(2),1111 (2024) doi: 10.3390/ijms25021111

2023 年

Enhancement of SARS-CoV-2 Infection via Crosslinking of Adjacent Spike Proteins by N-Terminal Domain-Targeting Antibodies
Lusiany T, Terada T, Kishikawa J, Hirose M, Chen DV, Sugihara F, Ismanto HS, van Eerden FJ, Li S, Kato T, Arase H, Yoshiharu M, Okada M, Standley DM.
Viruses. 15(12), 2421 (2023) doi:10.3390/v15122421

Structural insights into the agonists binding and receptor selectivity of human histamine H4 receptor
Im D, Kishikawa J, Shiimura Y, Hisano H, Ito A, Fujita-Fujiharu Y, Sugita Y, Noda T, Kato T, Asada H, Iwata S
Nat. Commun. 14(1), 6538 (2023) doi:10.1038/s41467-023-42260-z

An Ionizable Lipid Material with a Vitamin E Scaffold as an mRNA Vaccine Platform for Efficient Cytotoxic T Cell Responses
Oyama R, Ishigame H, Tanaka H, Takeshita N, Itazawa M, Imai R, Nishiumi N, Kishikawa J, Kato T, Anindita J, Nishikawa Y, Maeki M, Tokeshi M, Tange K, Nakai Y, Sakurai Y, Okada T, Akita H
ACS Nano 17(19), 18758-18774 (2023) doi:10.1021/acsnano.3c02251

An inhaled ACE2 decoy confers protection against SARS-CoV-2 infection in preclinical models
Urano E, Itoh Y, Suzuki T, Sasaki T, Kishikawa J, Akamatsu K, Higuchi Y, Sakai Y, Okamura T, Mitoma S, Sugihara F, Takada A, Kimura M, Nakao S, Hirose M, Sasaki T, Koketsu R, Tsuji S, Yanagida S, Shioda T, Hara E, Matoba S, Matsuura Y, Kanda Y, Arase H, Okada M, Takagi J, Kato T, Hoshino A, Yasutomi Y, Saito A, Okamoto T
Sci. Transl. Med. 15(711), eadi2623 (2023) doi:10.1126/scitranslmed.adi2623

Phosphorylation of α-synuclein at T64 results in distinct oligomers and exerts toxicity in models of Parkinson's disease
Matsui H, Ito S, Matsui H, Ito J, Gabdulkhaev R, Hirose Mika, Yamanaka T, Koyama A, Kato T, Tanaka M, Uemura N, Matsui N, Hirokawa S, Yoshihama M, Shimozawa A, Kubo S, Iwasaki K, Hasegawa M, Takahashi R, Hirai K, Kakita A, Onodera O
Proc. Natl. Acad. Sci. U. S. A. 120(23), e2214652120 (2023) doi:https://doi.org/10.1073/pnas.2214652120

Epoxidized graphene grid for highly efficient high-resolution cryoEM structural analysis
Fujita J, Makino F, Asahara H, Moriguchi M, Kumano S, Anzai I, Kishikawa J, Matsuura Y, Kato T, Namba K, Inoue T
Sci. Rep. 13, 2279 (2023) doi:10.1038/s41598-023-29396-0

Filamentous structures in the cell envelope are associated with bacteroidetes gliding machinery
Shibata S, Tahara YO, Katayama E, Kawamoto A, Kato T, Zhu Y, Nakane D, Namba K, Miyata M, McBride MJ, Nakayama K
Commun. Biol. 6(1), 94 (2023) doi:10.1038/s42003-023-04472-3

Cryo-EM analysis of V/A-ATPase intermediates reveals the transition of the ground-state structure to steady-state structures by sequential ATP binding
Nakanishi A. Kishikawa J, Mitsuoka K, Yokoyama K.
J. Biol. Chem. 299(2), 102884 (2023) doi:10.1016/j.jbc.2023.102884

2022 年

Structure of MotA, a flagellar stator protein, from hyperthermophile
Nishikino T, Takekawa N, Tran DP, Kishikawa J, Hirose M, Onoe S, Kojima S, Homma M, Kitao A, Kato T, Imada K
Biochem. Biophys. Res. Commun. 631, 78-85 (2022) doi: 10.1016/j.bbrc.2022.09.072

Progress in spatial resolution of structural analysis by cryo-EM
Fukuda Y, Stapleton K, Kato T
Microscopy (Oxf) dfac053 (2022) doi:10.1093/jmicro/dfac053

Cryo-EM structures of the translocational binary toxin complex CDTa-bound CDTb-pore from Clostridioides difficile
Kawamoto A, Yamada T, Yoshida T, Sato Y, Kato T, Tsuge H
Nat. Commun. 13, 6119 (2022) doi:10.1038/s41467-022-33888-4

Structural insights into the G protein selectivity revealed by the human EP3-Gi signaling complex
Suno R, Sugita Y, Morimoto K, Takazaki H, Tsujimoto H, Hirose M, Suno-Ikeda C, Nomura N, Hino T, Inoue A, Iwasaki K, Kato T, Iwata S, Kobayashi T
Cell Rep. 40(11), 111323 (2022) doi: 10.1016/j.celrep.2022.111323.

Mechanistic insights into intramembrane proteolysis by E. coli site-2 protease homolog RseP
Imaizumi Y, Takanuki K, Miyake T, Takemoto M, Hirata K, Hirose M, Oi R, Kobayashi T, Miyoshi K, Aruga R, Yokoyama T, Katagiri S, Matsuura H, Iwasaki K, Kato T, Kaneko MK, Kato Y, Tajiri M, Akashi S, Nureki O, Hizukuri Y, Akiyama Y, Nogi T
Sci. Adv. 8(34), eabp9011 (2022) doi: 10.1126/sciadv.abp9011

Structural insight into the activation mechanism of MrgD with heterotrimeric Gi-protein revealed by cryo-EM
Suzuki S, Iida M, Hiroaki Y, Tanaka K, Kawamoto A, Kato T, Oshima A
Commun. Biol. 5(1), 707 (2022) doi:10.1038/s42003-022-03668-3

Cryo-EM structures of Na+-pumping NADH-ubiquinone oxidoreductase from Vibrio cholerae
Kishikawa J, Ishikawa M, Masuya T, Murai M, Kitazumi Y, Butler NL, Kato T, Barquera B, Miyoshi H
Nat. Commun. 13, 4082 (2022)

Structures of Multisubunit Membrane Complexes With the CRYO ARM 200
Gerle C, Kishikawa J, Yamaguchi T, Nakanishi A, Çoruh O, Makino F, Miyata T, Kawamoto A, Yokoyama K, Namba K, Kurisu G, Kato T
Microscopy dfac037 (2022)

Isolation and structure of the fibril protein, a major component of the internal ribbon for Spiroplasma swimming
Sasajima Y, Kato T, Miyata T, Kawamoto A, Namba K, Miyata M
Front. Microbiol. 13, 1004601 (2022) doi:10.3389/fmicb.2022.1004601

De novo Fc-based receptor dimerizers differentially modulate PlexinB1 function
Sugano-Nakamura N, Matoba K, Hirose M, Bashiruddin NK, Matsunaga Y, Yamashita K, Hirata K, Yamamoto M, Arimori T, Suga H, Takagi J
Structure 30(10), 1411-1423.e4 (2022) doi:10.1016/j.str.2022.07.008

Structural basis of unisite catalysis of bacterial FoF1-ATPase
Nakano A, Kishikawa J, Nakanishi A, Mitsuoka K, Yokoyama K
PNAS Nexus pgac116 (2022)

Oscillatory movement of a dynein-microtubule complex crosslinked with DNA origami
Abdellatef SA, Tadakuma H, Yan K, Fujiwara T, ukumoto K, Kondo Y, Takazaki H, Boudria R, Yasunaga T, Higuchi H, Hirose K
eLife 11, e76357 (2022)

Structure and dynamics of Odinarchaeota tubulin and the implications for eukaryotic microtubule evolution
Akıl C, Ali S, Tran LT, Gaillard J, Li W, Hayashida K, Hirose M, Kato T, Oshima A, Fujishima K, Blanchoin L, Narita A, Robinson RC
Sci. Adv. 8(12), eabm2225 (2022)

Identification of Bacterial Drug-Resistant Cells by the Convolutional Neural Network in Transmission Electron Microscope Images
Hayashi-Nishino M, Aoki K, Kishimoto A, Takeuchi Y, Fukushima A, Uchida K, Echigo T, Yagi Y, Hirose M, Iwasaki K, Shin'ya E, Washio T, Surusawa C, Nishino K
Front. Microbiol. doi.org/10.3389/fmicb.2022.839718 (2022)

Structural snapshots of V/A-ATPase reveal the rotary catalytic mechanism of rotary ATPases
Kishikawa J, Nakanishi A, Nakano A, Saeki S, Furuta A, Kato T, Mitusoka K, Yokoyama K
Nat. Commun. 13, 1213 (2022)

High-resolution structure of phosphoketolase from Bifidobacterium longum determined by cryo-EM single-particle analysis
Nakata K, Miyazaki N, Yamaguchi H, Hirose M, Kashiwagi T, Kutumbarao N.H.V., Miyashita O, Tama F, Miyano H, Mizukoshi T, Iwasaki K
J. Struct. Biol. 214, 107842 (2022)

2021 年

Extended supercomplex contains type-II NADH dehydrogenase, cytochrome bcc complex, and aa3 oxidase in the respiratory chain of Corynebacterium glutamicum
Takazaki H, Kusumoto T, Ishibashi W, Yasunaga T, Sakamoto J
J. Biosci. Bioeng. S1389-1723(21), 00270-X (2021)

Structure of the molecular bushing of the bacterial flagellar motor.
Yamaguchi T, Makino F, Miyata T, Minamino T, Kato T, Namba K
Nat. commun. 12, 4469 (2021)

Chained structure of dimeric F1-like ATPase in Mycoplasma mobile gliding machinery.
Toyonaga T, Kato T, Kawamoto A, Kodera N, Hamaguchi T, Tahara YO, Ando T, Namba K, Miyata M.
mBio 12(4), e01414-21 (2021)

Native flagellar MS ring is formed by 34 subunits with 23-fold and 11-fold subsymmetries.
Kawamoto A, Miyata T, Makino F, Kinoshita M, Minamino T, Imada K, Kato T, Namba K
Nat. Commun. 12, 4223 (2021)

An infectivity-enhancing site on the SARS-CoV-2 spike protein targeted by COVID-19 patient antibodies.
Liu Y, Soh WT, Kishikawa J, Hirose M, Nakayama EE, Li S, Sasai M, Suzuki T, Tada A, Arakawa A, Matsuoka S, Akamatsu K, Matsuda M, Ono C, Torii S, Kishida K, Jin H, Nakai W, Arase N, Nakagawa A, Matsumoto M, Nakazaki Y, Shindo Y, Kohyama M, Tomii K, Ohmura K, Oshima S, Okamoto T, Yamamoto M, Nakagami H, Matsuura H, Nakagawa A, Kato T, Okada M, Standley DM, Shioda T, Arase H
Cell 184(13), 3452 (2021)

Cryo-EM structure of a functional monomeric Photosystem I from Thermosynechococcus elongatus reveals red chlorophyll cluster.
Çoruh O, Frank A, Tanaka H, Kawamoto A, El-Mohsnawy E, Kato T, Namba K, Gerle C, Nowaczyk MM, Kurisu G.
Commun Biol. 4(1), 304 (2021)

Moving toward generalizable NZ-1 labeling for 3D structure determinationwith optimized epitope tag insertion.
Tamura-Sakaguchi R, Aruga R, Hirose M, Ekimoto T, Miyake T, Hizukuri Y, Oi R, Kaneko K M, Kato Y, Akiyama Y, Ikeguchi M, Iwasaki K, Nogi T.
Acta Crystallogr. D Struct. Biol. D77 (2021)

Cryo-EM structure of a functional monomeric Photosystem I from Thermosynechococcus elongatus reveals red chlorophyll cluster.
Çoruh O, Frank A, Tanaka H, Kawamoto A, El-Mohsnawy E, Kato T, Namba K, Gerle C, Nowaczyk MM, Kurisu G.
Commun Biol. 4(1), 304 (2021)

Two Distinct Conformations in 34 FliF Subunits Generate Three Different Symmetries within the Flagellar MS-Ring.
Takekawa N, Kawamoto A, Sakuma M, Kato T, Kojima S, Kinoshita M, Minamino T, Namba K, Homma M, Imada K
mBio 12(2), e03199-20 (2021)

Cryo-EM structure of the CENP-A nucleosome in complex with phosphorylated CENP-C.
Ariyoshi M, Makino F, Watanabe R, Nakagawa R, Kato T, Namba K, Arimura Y, Fujita R, Kurumizaka H, Okumura EI, Hara M, Fukagawa T.
EMBO J. 40(5), e105671 (2021)

Extraction of protein dynamics information from cryo-EM maps using deep learning.
Matsumoto S, Ishida S, Araki M, Kato T, Terayama K, Okuno Y
Nat. Mach. Intell. 3, 153-160 (2021)

2020 年

Identification of chemical compounds as an inhibitor of mitochondrial ATP synthesis, leading to an increased stress resistance and an extended lifespan in C. elegans.
Ikeda T, Kishikawa J, Hayashida Y, Fujikawa M, Yokoyama K
BBA-Bioenergetics 1861(11),148281 (2020)

Coupling Ion Specificity of the Flagellar Stator Proteins MotA1/MotB1 of Paenibacillus sp. TCA20.
Onoe S, Yoshida M, Terahara N, Sowa Y
biomolecules 10(7),1078 (2020)

Mechanical inhibition of isolated Vo from V/A-ATPase for proton conductance.
*Kishikawa J, *Nakanishi A (*equally contribution), Furuta A, Kato T, Namba K, Tamakoshi M, Mitsuoka K, Yokoyama K
eLife 9,e56862 (2020)

Assembly mechanism of a supramolecular MS-ring complex to initiate bacterial flagellar biogenesis in Vibrio species.
Terashima H, Hirano K, Inoue Y, Tokano T, Kawamoto A, Kato T, Yamaguchi E, Namba K, Uchihashi T, Kojima S, Homma M
J. Bacteriol. JB.00236-20 (2020)

Structural and Functional Comparison of Salmonella Flagellar Filaments Composed of FljB and FliC.
Yamaguchi T, Toma S, Terahara N, Miyata T, Ashihara M, Minamino T, Namba K, Kato T
Biomolecules 10(2),246 (2020)

Energy landscape of domain motion in glutamate dehydrogenase deduced from cryo-electron microscopy.
Oide M, Kato T, Oroguchi T, Nakasako M
FEBS J. in press (2020)

2019 年

Refined Mechanism of Mycoplasma mobile Gliding Based on Structure, ATPase Activity, and Sialic Acid Binding of Machinery.
Nishikawa MS, Nakane D, Toyonaga T, Kawamoto A, Kato T, Namba K, Miyata M, Brennan RG
mBio 10(6),e02846-19 (2019)

Structure of the native supercoiled flagellar hook as a universal joint.
Kato T, Makino F, Miyata T, Horváth P, Namba K
Nat. Commun. 10,5295 (2019)

Structure of Salmonella flagellar hook reveals intermolecular domain interactions for the universal joint function.
Horváth P, Kato T, Miyata T, Namba K
Biomolecules 9,462 (2019)

Novel Insights into Conformational Rearrangements of the Bacterial Flagellar Switch Complex.
Sakai T, Miyata T, Terahara N, Mori K, Inoue Y, Morimoto YV, Kato T, Namba K, Minamino T
mBio 10,e00079-19 (2019)

Molecular shape under far-red light and red light-induced association of Arabidopsis phytochrome B.
Oide M, Hikima T, Oroguchi T, Kato T, Yamaguchi Y, Yoshihara S, Yamamoto M, Nakasako M, Okajima K
FEBS J. 287(8):1612-1625 (2019)

Cryo-EM studies of the rotary H+-ATPase/synthase from Thermus thermophilus.
Nakanishi A, Kishikawa J, Mitsuoka K, Yokoyama K
Biophys. Physicobiol. 16,140-146 (2019)

2018 年

Blue light–excited LOV1 and LOV2 domains cooperatively regulate the kinase activity of full-length phototropin2 from arabidopsis.
Oide M, Okajima K, Nakagami H, Kato T, ekiguchi Y, Oroguchi T, Hikima T, Yamamoto M, Nakasako M
J. Biol. Chem. 293,963-972 (2018)

General anesthetics cause mitochondrial dysfunction and reduction of intracellular ATP levels.
Kishikawa J, Inoue Y, Fujikawa M, Nishimura K, Nakanishi A, Tanabe T, Imamura H, Yokoyama K
PloS one 13(1),e0190213 (2018)

Cryo EM structure of intact rotary H+-ATPase/synthase from Thermus thermophilus.
*Nakanishi A, *Kishikawa J(*equally contribution), Tamakoshi M, Mitsuoka K, Yokoyama K
Nat. Commun. 9(1),89 (2018)

Effects of mixed ultrafine colloidal silica particles on chemical mechanical polishing of sapphire.
Bun-Athuek N, Takazaki H, Yoshimoto Y, Khajornrungruang P, Yasunaga T, Suzuki K
Jpn. J. Appl. Phys. 57(7),07MD03 (2018)

2017 年

Pressure-induced activation of the swimming motility of magnetotactic bacterium.
Nishiyama M, Juanfang R, Kato T, Minamino T, Namba K, Seiyama A, Wu LF, Harada Y
Biophys. J. 114, 324A (2017)

Assembly and stoichiometry of the core structure of the bacterial flagellar type III export gate complex.
Fukumura T, Makino F, Dietsche T, Kinoshita M, Kato T, Wagner S, Namba K, Imada K, Minamino T
PloS Biol. 15(8),e2002281 (2017)

Identical folds used for distinct mechanical functions of the bacterial flagellar rod and hook.
Fujii T, Kato T, Hiraoka KD, Miyata T, Minamino T, Chevance FFV, Hughes KT, Namba K
Nat. Commun. 8,14276 (2017)

2016 年

The Tetrameric MotA Complex as the Core of the Flagellar Motor Stator From Hyperthermophilic Bacterium.
Takekawa N, Terahara N, Kato T, Gohara M, Mayanagi K, Hijikata A, Onoue Y, Kojima S, Shirai T, Namba K, Homma M
Sci. Rep. 6,31526 (2016)

Periodicity in Attachment Organelle Revealed by Electron Cryotomography Suggests Conformational Changes in Gliding Mechanism of Mycoplasma Pneumoniae.
Kawamoto A, Matsuo L, Kato T, Yamamoto H, Namba K, Miyata M
mBio 7(2),e00243-16 (2016)

High-Resolution pH Imaging of Living Bacterial Cells To Detect Local pH Differences.
Morimoto YV, Kami-Ike N, Miyata T, Kawamoto A, Kato T, Namba K, Minamino T
mBio 7(6),e01911-16 (2016)

Rotation of artificial rotor axles in rotary molecular motors.
Baba M, Iwamoto K, Iino R, Ueno H, Hara M, Nakanishi A, Kishikawa J, Noji H, Yokoyama K
Proc. Natl. Acad.Sci. U.S.A. 113(40),11214-11219 (2016)

Reversal of axonal growth defects in an extraocular fibrosis model by engineering the kinesinmicrotubule interface.
Minoura I, Takazaki H, Ayukawa R, Saruta C, Hachikubo Y, Uchimura S, Hida T, Kamiguchi H, Shimogori T, Muto E
Nat. Commun. 7,10058 (2016)

Molecular mechanism underlying promiscuous polyamine recognition by spermidine acetyltransferase.
Sugiyama S, Ishikawa S, Tomitori H, Niiyama M, Hirose M, Miyazaki Y, Higashi K, Murata M, Adachi H, Takano K, Murakami S, Inoue T, Mori Y, Kashiwagi K, Igarashi K, Matsumura H
Int. J. Biochem. Cell. Biol. 76,87-97 (2016)

2015 年

Cryogenic coherent x-ray diffraction imaging for biological non-crystalline particles using the KOTOBUKI-1 diffraction apparatus at SACLA.
Oroguchi T, Sekiguchi Y, Kobayashi A, Masaki Y, Fukuda A, Hashimoto S, Nakasako M, Ichikawa Y, Kurumizaka H, Shimizu M, Inui Y, Matsunaga S, Kato T, Namba K, Yamaguchi K, Kuwata K, Kameda H, Fukui N, Kawata Y, Kameshima T, Takayama Y, Yonekura K,Yamamoto M
J. Phys. B 48(18) (2015)

Three-dimensional Electron Microscopy Reconstruction and Cysteine-Mediated Crosslinking Provide a Model of the Type III Secretion System Needle Tip Complex.
Cheung M, Shen DK, Makino F, Kato T, Roehrich AD, Martinez-Argudo I, Walker ML, Murillo I, Liu X, Pain M, Brown J, Frazer G, Mantell J, Mina P, Todd T, Sessions RB, Namba K, Blocker AJ
Mol. Microbiol. 95(1),31-50 (2015)

The Ingenious Structure of Central Rotor Apparatus in VoV1; Key for Both Complex Disassembly and Energy Coupling between V1 and Vo
*Nakanishi A, *Kishikawa J, Tamakoshi M, Yokoyama K
Plos One 10(3),e0119602 (2015)

A Mechanical Switch from Diffusion to Directional Motion Activates ATPase in Dynein Motor.
Uchimura S, Fujii T, Takazaki H, Ayukawa R, Nishikawa Y, Minoura I, Hachikubo Y, Kurisu G, Sutoh K, Kon T, Namba K, Muto E
Biophys. J. 108(2),22a (2015)

A flipped ion pair at the dynein-microtubule interface is critical for dynein motility and ATPase activation.
Uchimura S, *Fujii T, *Takazaki H, Ayukawa R, Nishikawa Y, Minoura I, Hachikubo Y, Kurisu G, Sutoh K, Kon T, Namba K, Muto E. (*equal contribution)
J. Cell Biol. 208(2),211-22 (2015)

Water-mediated recognition of simple alkyl chains by heart-type fatty-acid-binding protein.
Matsuoka S, Sugiyama S, Matsuoka D, Hirose M, Lethu S, Ano H, Hara T, Ichihara O, Kimura SR, Murakami S, Ishida H, Mizohata E, Inoue T, Murata M
Angew. Chem. Int. Ed. Engl. 54(5),1508-1511 (2015)

2014 年

Photoresponsive DNA nanocapsule having an open/close system for capture and release of nanomaterials.
Takenaka T, Endo M, Suzuki Y, Yang Y, Emura T, Hidaka K, Kato T, Miyata T, Namba K, Sugiyama H
Chem. A Eur. J. 20(46),14951-14954 (2014)

Swimming behaviour and magnetotaxis function of the marine bacterium strain MO-1.
Zhang SD, Petersen N, Zhang WJ, Cargou S, Ruan J, Murat D, Santini CL, Song T, Kato T, Notareschi P, Li Y, Namba K, Gué AM, Wu LF
Environ. Microbiol. Rep. 6(1),14-20 (2014)

F-subunit reinforces torque generation in V-ATPase.
Kishikawa J, Seino A, Nakanishi A, Tirtom NE, Noji H, Yokoyama K, Hayashi K
Eur. Biophys. J. 43(8-9),415-422 (2014)

Molecular Basis of ADP Inhibition of Vacuolar (V)-type ATPase/Synthase.
Kishikawa J, Nakanishi A, Furuike S, Tamakoshi M, Yokoyama K
J. Biol. Chem. 289(1),403-412 (2014)

Crystal structure of FtsA from Staphylococcus aureus.
Fujita J, Maeda Y, Nagao C, Tsuchiya Y, Miyazaki Y, Hirose M, Mizohata E, Matsumoto Y, Inoue T, Mizuguchi K, Matsumura H
FEBS Lett. 588(10),1879-1885 (2014)

Interaction kinetics of liposome-incorporated unsaturated fatty acids with fatty acid-binding protein 3 by surface plasmon resonance.
Tan MC, Matsuoka S, Ano H, Ishida H, Hirose M, Sato F, Sugiyama S, Murata M
Bioorg. Med. Chem. 22(6),1804-1808 (2014)

2013 年

High-speed atomic force microscopic observation of ATP-dependent rotation of the AAA+ chaperone p97.
Noi K, Yamamoto D, Nishikori S, Arita-Morioka KI, Kato T, Ando T, Ogura T
Structure 21(11),1992-2002 (2013)

Common and Distinct Structural Features of Salmonella Injectisome and Flagellar Basal Body.
Kawamoto A, Morimoto YV, Miyata T, Minamino T, Hughes KT, Kato T, Namba K
Sci. Rep. 3,3369 (2013)

Conservation of Two Distinct Types of 100S Ribosome in Bacteria.
Ueta M, Wada C, Daifuku T, Sako Y, Bessho Y, Kitamura A, Ohniwa RL, Morikawa K, Yoshida H, Kato T, Miyata T, Namba K, Wada A
Genes Cells 18(7),554-74 (2013)

Role of the Dc domain of the bacterial hook protein FlgE in hook assembly and function.
Moriya N, Minamino T, Ferris HU, Morimoto YV, Ashihara M, Kato T, Namba K
Biophys.(Japan) 9,3-72 (2013)

A Method to Achieve Homogeneous Dispersion of Large Transmembrane Complexes Within the Holes of Carbon Films for Electron Cryomicroscopy.
Cheung M, Kajimura N, Makino F, Ashihara M, Miyata T, Kato T, Namba K, Blocker AJ
J. Struct. Biol. 182(1),51-6 (2013)

In Vivo Fluorescent Adenosine 5'-Triphosphate (ATP) Imaging of Drosophila melanogaster and Caenorhabditis elegans by Using a Genetically Encoded Fluorescent ATP Biosensor Optimized for Low Temperatures.
*Tsuyama T, *Kishikawa J, Han YH, Harada Y, Tsubouchi A, Noji H, Kakizuka A, Yokoyama K, Uemura T, Imamura H
Anal. Chem. 85(16),7889-7896 (2013)

Common Evolutionary Origin for the Rotor Domain of Rotary Atpases and Flagellar Protein Export Apparatus.
Kishikawa J, Ibuki T, Nakamura S, Nakanishi A, Minamino T, Miyata T, Namba K, HKonno H, Ueno H, Imada K, Yokoyama K
Plos One 8(5),e64695 (2013)

Structure of the human-heart fatty-acid-binding protein 3 in complex with the fluorescent probe 1-anilinonaphthalene-8-sulphonic acid.
Hirose M, Sugiyama S, Ishida H, Niiyama M, Matsuoka D, Hara T, Mizohata E, Murakami S, Inoue T, Matsuoka S, Murata M
J. Synchrotron. Radiat. 20(Pt 6),923-928 (2013)

Expression, purification, crystallization and preliminary crystallographic study of FtsA from methicillin-resistant Staphylococcus aureus.
Fujita J, Miyazaki Y, Hirose M, Nagao C, Mizohata E, Matsumoto Y, Mizuguchi K, Inoue T, Matsumura H
Acta Crystallogr. Sect. F Struct. Biol. Cryst. Commun. 69(Pt 8),895-898 (2013)

Expression, purification, crystallization and preliminary crystallographic analysis of spermidine acetyltransferase from Escherichia coli.
Niiyama M, Sugiyama S, Hirose M, Ishikawa S, Tomitori H, Higashi K, Yamashita T, Adachi H, Takano K, Murakami S, Murata M, Inoue T, Mori Y, Kashiwagi K, Matsumura H, Igarashi K
Acta Crystallogr. Sect. F Struct. Biol. Cryst. Commun. 69(Pt 8),884-887 (2013)

2012 年

Architecture of a flagellar apparatus in the fast-swimming magnetotactic bacterium MO-1.
Ruan J, Kato T, Santini CL, Miyata T, Kawamoto A, Zhang WJ, Bernadac A, Wu LF, Namba K
Proc. Natl. Acad. Sci. USA 109,20643-20648 (2012)

Complex Spatial Organization and Flagellin Composition of Flagellar Propeller from Marine Magnetotactic Ovoid Strain MO-1 Zhang WJ, Santini CL, Bernadac A, Ruan J, Zhang SD, Kato T, Li Y, Namba K, Wu LF
J.Mol. Biol. 416(4),558-570 (2012)

Structure of a type III secretion needle at 7-Å resolution provides insights into its assembly and signaling mechanisms.
Fujii T, Cheung M, Blanco A, Kato T, Blocker AJ, Namba K
Proc. Natl. Acad. Sci. USA 109,4461-4466 (2012)

Reconstitution of Vacuolar-type Rotary H+-ATPase/Synthase from Thermus thermophilus.
Kishikawa J, Yokoyama K
J. Biol. Chem. 287(29),24597-24603 (2012)

MRT letter: Expression of ATP sensor protein in Caenorhabditis elegans.
Kishikawa J, Fujikawa M, Imamura H, Yasuda K, Noji H, Ishii N, Mitani S, Yokoyama K
Microsc. Res. Tech. 75(1),15-19 )2012)

Measurements of the driving forces of bio-motors using the fluctuation theorem.
Hayashi K, Tanigawara M, Kishikawa J
Biophysics 8,67-72 (2012)

Three-dimensional, non-invasive, cross-sectional imaging of protein crystals using ultrahigh resolution optical coherence tomography.
Nishizawa N, Ishida S, Hirose M, Sugiyama S, Inoue T, Mori Y, Itoh K, Matsumura H
Biomed. Opt. Express. 3(4),735-740 (2012)

Growth of protein crystals in hydrogels prevents osmotic shock.
Sugiyama S, Maruyama M, Sazaki G, Hirose M, Adachi H, Takano K, Murakami S, Inoue T, Mori Y, Matsumura H
J. Am. Chem. Soc. 134(13),5786-5789 (2012)

2011 年

Common Architecture of the Flagellar Type III Protein Export Apparatus and F- And V-type ATPases.
Ibuki T, Imada K, Minamino T, Kato T, Miyata T, Namba K
Nat. Struct. Mol. Biol. 18(3),277-282 (2011)

Structure basis for the regulation of glyceraldehyde-3-phosphate dehydrogenase activity via the intrinsically disordered protein CP12.
Matsumura H, Kai A, Maeda T, Tamoi M, Satoh A, Tamura H, Hirose M, Ogawa T, Kizu N, Wadano A, Inoue T, Shigeoka S
Structure 19(12),1846-1854

Approach for growth of high-quality and large protein crystals.
Matsumura H, Sugiyama S, Hirose M, Kakinouchi K, Maruyama M, Murai R, Adachi H, Takano K, Murakami S, Mori Y, Inoue T
J. Synchrotron Radiat. 18(1),16-19 (2011)

2010 年

Structure of the 100S Ribosome in the Hibernation Stage Revealed by Electron Cryomicroscopy.
Kato T, Yoshida H, Miyata T, Maki Y, Wada A, Namba K
Structure 18(6),719-724 (2010)

The cytochrome bcc-aa(3)-type respiratory chain of Rhodococcus rhodochrous.
Kishikawa J, Kabashima Y, Kurokawa T, Sakamoto J
J. Biosci. Bioeng. 110(1),42-47 (2010)

書籍・総説など

クライオ電子顕微鏡ハンドブック
難波 啓一、加藤 貴之、牧野 文信 監修、NTS (2023)
第2章 試料作製技術
 第1節 氷包埋試料作製技術 pp47-54
廣瀬 未果加藤 貴之
第3章 単粒子解析~撮影から画像解析,モデリング,データベース登録~
 第4節 主な画像解析ソフトの特徴と応用 pp101-108
岸川 淳一

クライオ電顕構造で見えてきたV/A型ATPaseの回転メカニズム
岸川 淳一、横山 謙
生物物理 62(6), 354-356 (2022) doi: 10.2142/biophys.62.354

RRFとtRNAによるリボソームリサイクリングに関する構造学的洞察
丹澤 豪人
生物物理 62(5), 303-304 (2022) doi: 10.2142/biophys.62.303

Electron Microscopy of Motor Structure and Possible Mechanisms.
Minamino T, Kato T, Makino F, Horvath P, Miyata T, Namba K
Encyclopedia of Biophysics Springer, Roberts G.C.K. (eds) Berlin, Heidelberg (2018)

低温電子顕微鏡を用いた回転分子モーターV型ATPase単粒子解析
岸川 淳一
顕微鏡 53(1),3-7 (2018)

クライオ電顕による ATP 合成酵素の単粒子解析
横山謙, 中西温子, 光岡薫, 岸川淳一
生物物理 58(5),248-250 (2018)

Structure of Prokaryotic V-Type ATPase/Synthase.
Yokoyama K, Kishikawa J
Handbook of H+-ATPases, CRC press, Nakamura S. (eds) pp.31-50 (2014)

ATP imaging in Xenopus laevis oocytes.
Ijiri TW, Kishikawa J, Imamura H, Iwao Y, Yokoyama K, Sato K
Sexual Reproduction in Animals and Plants, Springer(Tokyo), Sawada H, Inoue N, Iwano M (eds) pp181-186 (2014)

受賞など

第一回蛋白質研究所化学系卒業研究発表会 ベストプレゼン賞
堀井 大雅
2024/03/06 大阪大学蛋白質研究所

2023 年度 IPR リトリート最優秀発表賞
小西 雄一朗
堀井 大雅
2023/11/21 大阪大学蛋白質研究所

大阪大学賞 若手教員部門
クライオ電子顕微鏡による生体分子複合体の立体構造解析に関する研究
岸川 淳一
2022/11/24 大阪大学

若手招待講演賞
丹澤 豪人
2021/11/25 第59回日本生物物理学会年会

2021 年度 IPR リトリート最優秀発表賞
尾上 さくら
2021/11/15 大阪大学蛋白質研究所

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