Osaka University

Laboratory of Protein Informatics, Research Center for State-of-the-Art Functional Protein Analysis

Institute for Protein Research, Osaka University

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Last Updated : 2016.4.12
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2011.6.7

New services (MATRAS, GHECOM, KCOMBU) started
   


Institute for Protein Research


Osaka University

 


Our laboratory, Laboratory of Protein Informatics, is engaged in the protein informatics researches by developing the international protein structural databases and the structural bioinformatics covering molecular modeling and design. We also perform large scale simulation calculations by parallel computers to examine free energy landscapes and biochemical functions of biomolecular systems with molecular dynamics and quantum chemistry simulations.

Research Activities

Laboratory of Protein Informatics are engaged in the following protein informatics researches:

  1. Development and maintenance of international protein structural databases (PDBj) and structural bioinformatics covering molecular modeling and design.

  2. Development of new databases and Web services: eF-site, for protein surface geometry with the physicochemical properties; PreDs, for prediction of the putative double-stranded DNA binding sites of proteins based on the protein molecular surface features; and HINT, Homologous Interaction Database. Structural bioinformatics studies, focusing on protein-protein interactions.

  3. Large scale simulation calculations by parallel computers to examine free energy landscapes of biomolecular systems with the hybrid QM (Quantum mechanics) / MM (Molecular mechanics) method for analysis of biochemical reactions.

 
 
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3-2 Yamadaoka, Suita, Osaka 565-0871, JAPAN
tel: +81-06-6879-4311 (Nakamura,Secretaryj Fax: 06-6879-8636
Email: (Secretaryj