{"id":428,"date":"2015-06-09T13:03:39","date_gmt":"2015-06-09T04:03:39","guid":{"rendered":"http:\/\/www.protein.osaka-u.ac.jp\/rcsfp\/supracryst\/?page_id=428"},"modified":"2016-12-21T23:40:48","modified_gmt":"2016-12-21T14:40:48","slug":"past","status":"publish","type":"page","link":"http:\/\/www.protein.osaka-u.ac.jp\/rcsfp\/supracryst\/en\/publications\/papers\/past\/","title":{"rendered":"Publications before 2011"},"content":{"rendered":"

2011<\/h3>\n

Kohei TAKESHITA, Isao SUETAKE, Eiki YAMASHITA, Michihiro SUGA, Hirotaka NARITA, Atsushi NAKAGAWA, and Shoji TAJIMA
\n Structural insight into maintenance methylation by mouse DNA methyltransferase 1 (Dnmt1)<\/strong>
\n Proceedings of the National Academy of Science USA, <\/em>108<\/strong>, 9055-9059 (2011)<\/p>\n

Fusamichi AKITA, Akifumi HIGASHIURA, Takumi SHIMIZU, Yingying PU, Mamoru SUZUKI, Tamaki UEHRARA-ICHIKI, Takahide SASAYA, Shuji KANAMARU, Fumio ARISAKA, Tomitake TSUKIHARA, Atsushi NAKAGAWA, and Toshihiro OMURA
\n Crystallographic analysis reveals octamerization of viroplasm matrix protein P9-1 of Rice black streaked dwarf virus<\/em><\/strong>
\n Journal of Virology<\/em>, 86,<\/strong> 746-756 (2011)<\/p>\n

Fusamichi AKITA, Naoyuki MIYAZAKI, Hiroyuki HIBINO, Takumi SHIMIZU, Akifumi HIGASHIURA, Tamaki UEHRARA-ICHIKI, Takahide SASAYA, Tomitake TSUKIHARA, Atsushi NAKAGAWA, Kenji IWASAKI, and Toshihiro OMURA
\n Viroplasm matrix protein Pns9 from rice gall dwarf virus<\/em> forms an octameric cylindrical structure<\/strong>
\n Journal of General Virology<\/em>, 92,<\/strong> 2214-2221 (2011)<\/p>\n

Makoto MATSUDA, Kohei TAKESHITA, Tatsuki KUROKAWA, Souhei SAKATA, Mamoru SUZUKI, Eiki YAMASHITA, Yasushi OKAMURA, and Atsushi NAKAGAWA
\n Crystal structure of the cytoplasmic phosphatase and tensin homolog (PTEN)-like region of Ciona intestinalis voltage-sensing phosphatase provides insight into substrate specificity and redox regulation of the phosphoinositide phosphatase activity<\/strong>
\n The Journal of Biological Chemistry<\/em>, 286<\/strong>, 23368-23377 (2011)<\/p>\n

S. Salf HASAN, Eiki YAMASHITA, Christopher M. Ryan, Julian P. WHITELEGGE, William A. CRAMER
\n Conservation of lipid functions in cytochrome bc<\/em> complexes<\/strong>
\n The Journal of Molecular Biology, <\/em>414<\/strong>, 145-162 (2011)<\/p>\n

Atsushi INANOBE, Atsushi NAKAGAWA, and Yoshihisa KURACHI
\n Interactions of cations with the cytoplasmic pores of inward rectigier K+channels in the closed state<\/strong>
\n The Journal of Biological Chemistry<\/em>, 286,<\/strong> 41801-41811 (2011)<\/p>\n

So NAKAGAWA, Xiang-Qun GONG, Shoji MAEDA, Yuhua DONG, Yuko MISUMI, Tomitake TSUKIHARA, and Donglin BAI
\n Asparagine 175 of connexin32 is a critical residue for docking and forming functional heterotypic gap junction channels with connexin26<\/strong>
\n The Journal of Biological Chemistry<\/em>, 286<\/strong>, <\/strong>19672-19681 (2011)<\/p>\n

Michihiro SUGA, Naomine YANO, Kazumasa MURAMOTO, Kyoko SHINZAWA-ITOH, Tomoko MAEDA, Eiki YAMASHITA, Tomitake TSUKIHARA, and Shinya YOSHIKAWA
\n Distinguishing between Cl- and O22- as the bridging element between Fe3+<\/sup> and Cu2+<\/sup> in resting-oxidized cytochrome c<\/em> oxidase<\/strong>
\n Acta Crystallographica Section <\/em>D, 67<\/strong>,742-744 (2011)<\/p>\n

Eiki YAMASHITA, Atsushi NAKAGAWA, Junichi TAKAHASHI, Kin-ichi TSUNODA, Seiko YAMADA, and Shigeki TAKEDA
\n T<\/strong>he host-binding domain of the P2 phage tail spike reveals a trimeric iron-binding structure<\/strong>
\n Acta Crystallographica Section <\/em>F, 67<\/strong>, 837-841 (2011)<\/p>\n

Jinsue SONG, Hyerim HONG, Saehae CHOI, Yong Hee LEE, Eiki YAMASHITA, Suk-Chul BAE, Il Yeong PARK, and Soo Jae LEE
\n Crystallization and preliminary X-ray crystallographic study of the human MST2 SARAH domain<\/strong>
\n Acta Crystallographica Section <\/em>F, 67<\/strong>, 1403-1405 (2011)<\/p>\n

Atsushi INANOBE, Takanori MATSUURA, Atsushi NAKAGAWA, and Yoshihisa KURACHI
\n Inverse agonist-like action of calcium on G-protein-gated inward-rectifier K+ channels<\/strong>
\n Biochemical and Biophysical Research Communications,<\/em> 407<\/strong>, 366-371 (2011)<\/p>\n

Ken-ichiro TAOKA, Izuru OHKI,\u00a0 Hiroyuki TSUJI, Kyoko FURUITA, Kokoro HAYASHI, Tomoko YANASE, Midori YAMAGUCHI, Chika NAKASHIMA, Yekti Asih Purwestri, Shojiro TAMAKI, Yuka OGAKI, Chihiro SHIMADA, Atsushi NAKAGAWA, Chojiro KOJIMA, and Ko SHIMAMOTO
\n 14-3-3 proteins act as intracellular receptors for rice Hd3a florigen<\/strong>
\n Nature,<\/em> 476<\/strong>, 332-335 (2011)<\/p>\n

William A. CRAMER, S. Salf HASAN, and Eiki YAMASHITA
\n The Q cycle of chtochrome bc complexes: A structure perspective<\/strong>
\n Biochimica et Biophysica Acta-Bioenegetics<\/em>, 1807<\/strong>, 788-802 (2011)<\/p>\n

Narita, H., Nakagawa, A., Yamamoto, Y., Sakisaka, T., Takai, Y., and Suzuki, M.
\n Refolding, crystallization and preliminary X-ray crystallographic study of the whole extracellular regions of nectins.<\/strong>
\n Acta Cryst.<\/em> F67<\/strong>:344-348.<\/p>\n

Narita, H., Yamamoto, Y., Suzuki, M., Miyazaki, N., Yoshida, A., Kawai, K., Iwasaki, K.,Nakagawa, A., Takai, Y., and Sakisaka, T.:
\n Crystal structure of the cis-dimer of nectin-1: Implications for the architecture of cell-cell junctions<\/strong>.
\n The Journal of Biological Chemistry<\/em> 286<\/strong>: 12659-12669.<\/p>\n

Hagiwara, M., Maegawa, K., Suzuki, M., Ushioda, R., Araki, K., Matsumoto, Y., Hoseki, J., Nagata, K. and Inaba, K.:
\n Structural Basis of an ERAD Pathway Mediated by the ER-Resident Protein Disulfide Reductase ERdj5<\/strong>.
\n Molecular Cell<\/em> 41<\/strong>\uff1a432-444.<\/p>\n

Lee SJ, Jiko C, Yamashita E, Tsukihara T.:
\n Selective nuclear export mechanism of small RNAs.<\/strong>
\n Curr Opin Struct Biol<\/em>.21<\/strong>: 101-108.<\/p>\n

2010<\/h3>\n

Coban C, Igari Y, Yagi M, Reimer T, Koyama S, Aoshi T, Ohata K, Tsukui T, Takeshita F, Sakurai K, Takeshita F, Sakurai K, Ikegami T, Nakagawa A<\/span>, Horii T, Nu\u00f1ez G, Ishii KJ, Akira S.:
\n Immunogenicity of whole-parasite vaccines against Plasmodium falciparum involves malarial hemozoin and host TLR9<\/strong>.
\n Cell Host Microbe <\/em>7<\/strong>:50-61.<\/p>\n

Fujiwara K, Maita N, Hosaka H, Okamura-Ikeda K, Nakagawa A<\/span>, Taniguchi H:
\n Global conformational change associated with the two-step reaction catalyzed by Escherichia coli lipoate-protein ligase A<\/strong>.
\n J Biol Chem <\/em>285<\/strong>:9971-9980.<\/p>\n

Higashiura A, Kurakane T, Matsuda M, Suzuki M, Inaka K, Sato M, Kobayashi T, Tanaka T, Tanaka H, Fujiwara K, Nakagawa A<\/span>.:
\n High-resolution X-ray crystal structure of bovine H-protein at 0.88 A resolution<\/strong>.
\n Acta Crystallogr D Biol Crystallogr <\/em>66<\/strong>:698-708.<\/p>\n

Miyazaki N, Wu B, Hagiwara K, Wang CY, Xing L, Hammar L, Higashiura A, Tsukihara T,Nakagawa A<\/span>, Omura T, Cheng RH.:
\n The functional organization of the internal components of Rice dwarf virus<\/strong>.
\n J Biochem <\/em>147<\/strong>:843-850.<\/p>\n

Ohta K, Muramoto K, Shinzawa-Itoh K, Yamashita E, Yoshikawa S, Tsukihara T:
\n X-ray structure of the NO-bound Cu(B) in bovine cytochrome c oxidase<\/strong>.
\n Acta Crystallogr Sect F Struct Biol Cryst Commun <\/em>66:251-253.<\/p>\n

2009<\/h3>\n

Aoyama H, Muramoto K, Shinzawa-Itoh K, Hirata K, Yamashita E<\/span>, Tsukihara T, Ogura T, Yoshikawa S:
\n A peroxide bridge between Fe and Cu ions in the O2 reduction site of fully oxidized cytochrome c oxidase could suppress the proton pump<\/strong>.
\n Proc Natl Acad Sci U S A <\/em>2009, 106<\/strong>:2165-2169.<\/p>\n

Baniulis D, Yamashita E<\/span>, Whitelegge JP, Zatsman AI, Hendrich MP, Hasan SS, Ryan CM, Cramer WA:
\n Structure-Function, Stability, and Chemical Modification of the Cyanobacterial Cytochrome b6f Complex from Nostoc sp. PCC 7120<\/strong>.
\n J Biol Chem <\/em>2009, 284<\/strong>:9861-9869.<\/p>\n

Inaba K, Murakami S, Nakagawa A<\/span>, Iida H, Kinjo M, Ito K, Suzuki M<\/span>:
\n Dynamic nature of disulphide bond formation catalysts revealed by crystal structures of DsbB<\/strong>.
\n EMBO J <\/em>2009, 28<\/strong>:779-791.<\/p>\n

Kodama Y, Masaki K, Kondo H, Suzuki M<\/span>, Tsuda S, Nagura T, Shimba N, Suzuki E, Iefuji H:
\n Crystal structure and enhanced activity of a cutinase-like enzyme from Cryptococcus sp. strain S-2<\/strong>.
\n Proteins <\/em>2009, 77<\/strong>:710-717.<\/p>\n

Maeda S, Nakagawa S, Suga M, Yamashita E<\/span>, Oshima A, Fujiyoshi Y, Tsukihara T:
\n Structure of the connexin 26 gap junction channel at 3.5 A resolution<\/strong>.
\n Nature <\/em>2009, 458<\/strong>:597-602.<\/p>\n

Mukai M, Ikegami K, Sugiura Y, Takeshita K, Nakagawa A<\/span>, Setou M:
\n Recombinant mammalian tubulin polyglutamylase TTLL7 performs both initiation and elongation of polyglutamylation on beta-tubulin through a random sequential pathway<\/strong>.
\n Biochemistry <\/em>2009, 48<\/strong>:1084-1093.<\/p>\n

Okada C, Yamashita E<\/span>, Lee SJ, Shibata S, Katahira J, Nakagawa A<\/span>, Yoneda Y, Tsukihara T:
\n A high-resolution structure of the pre-microRNA nuclear export machinery<\/strong>.
\n Science <\/em>2009, 326<\/strong>:1275-1279.<\/p>\n

Suga M, Maeda S, Nakagawa S, Yamashita E<\/span>, Tsukihara T:
\n A description of the structural determination procedures of a gap junction channel at 3.5 A resolution<\/strong>.
\n Acta Crystallogr D Biol Crystallogr <\/em>2009, 65<\/strong>:758-766.<\/p>\n

Tanaka H, Kato K, Yamashita E<\/span>, Sumizawa T, Zhou Y, Yao M, Iwasaki K, Yoshimura M, Tsukihara T:
\n The structure of rat liver vault at 3.5 angstrom resolution<\/strong>.
\n Science <\/em>2009, 323<\/strong>:384-388.<\/p>\n

2008<\/h3>\n

Inaba K, Suzuki M<\/span>, Maegawa K, Akiyama S, Ito K, Akiyama Y:
\n A pair of circularly permutated PDZ domains control RseP, the S2P family intramembrane protease of Escherichia coli<\/strong>.
\n J Biol Chem <\/em>2008, 283<\/strong>:35042-35052.<\/p>\n

Ishii KJ, Koyama S, Nakagawa A<\/span>, Coban C, Akira S:
\n Host innate immune receptors and beyond: making sense of microbial infections<\/strong>.
\n Cell Host Microbe <\/em>2008, 3<\/strong>:352-363.<\/p>\n

Kato K, Tanaka H, Sumizawa T, Yoshimura M, Yamashita E<\/span>, Iwasaki K, Tsukihara T:
\n A vault ribonucleoprotein particle exhibiting 39-fold dihedral symmetry<\/strong>.
\n Acta Crystallogr D Biol Crystallogr <\/em>2008, 64<\/strong>:525-531.<\/p>\n

Miyazaki N, Uehara-Ichiki T, Xing L, Bergman L, Higashiura A, Nakagawa A<\/span>, Omura T, Cheng RH:
\n Structural evolution of reoviridae revealed by oryzavirus in acquiring the second capsid shell.<\/strong>
\n J Virol <\/em>2008, 82<\/strong>:11344-11353.<\/p>\n

Nakaishi A, Hirose M, Yoshimura M, Oneyama C, Saito K, Kuki N, Matsuda M, Honma N, Ohnishi H, Matozaki T, Okada M, Nakagawa A<\/span>.:
\n Structural insight into the specific interaction between murine SHPS-1\/SIRP alpha and its ligand CD47<\/strong>.
\n J Mol Biol <\/em>2008, 375<\/strong>:650-660.<\/p>\n

Nishimiya Y, Kondo H, Takamichi M, Sugimoto H, Suzuki M<\/span>, Miura A, Tsuda S:
\n Crystal structure and mutational analysis of Ca2+-independent type II antifreeze protein from longsnout poacher, Brachyopsis rostratus<\/strong>.
\n J Mol Biol <\/em>2008, 382<\/strong>:734-746.<\/p>\n

Son SY, Ma J, Kondou Y, Yoshimura M, Yamashita E<\/span>, Tsukihara T:
\n Structure of human monoamine oxidase A at 2.2-A resolution: the control of opening the entry for substrates\/inhibitors<\/strong>.
\n Proc Natl Acad Sci U S A <\/em>2008, 105<\/strong>:5739-5744.<\/p>\n

Wang CY, Miyazaki N, Yamashita T, Higashiura A, Nakagawa A<\/span>, Li TC, Takeda N, Xing L, Hjalmarsson E, Friberg C, Liou DM, Sung YJ, Tsukihara T, Matsuura Y, Miyamura T, Cheng RH.:
\n Crystallization and preliminary X-ray diffraction analysis of recombinant hepatitis E virus-like particle<\/strong>.
\n Acta Crystallogr Sect F Struct Biol Cryst Commun <\/em>2008, 64<\/strong>:318-322.<\/p>\n

2007<\/h3>\n

High-resolution crystal structure of beta2<\/sub>-microglobulin formed at pH 7.0
\n Kentaro Iwata, Takanori Matsuura, Kazumasa Sakurai, Atsushi Nakagawa, and Yuji Goto
\n Journal of Biochemistry<\/em>, 142<\/strong>(3), 413-419 (2007)<\/p>\n

Crystal Structure of Bovine Lipoyltransferase in Complex with Lipoly-AMP
\n Kazuko Fujiwara, Harumi Hosaka, Makoto Matsuda, Kazuko Okamura-Ikeda, Yurato Motokawa, Mamoru Suzuki, Atsushi Nakagawa and Hisaaki Taniguchi
\n Journal of Molecular Biology<\/em>, 371<\/strong>(5), 222-234 (2007)<\/p>\n

Crystal structure of mammalian a<\/span>1,6-fucosyltransferase, FUT8
\n Hideyuki Ihara, Yoshitaka Ikeda, Sachiko Toma, Xiangchun Wang, Tadashi Suzuki, Jianguo Gu, Eiji Miyoshi, Tomitake Tsukihara, Koichi Honke, Akio Matsumoto, Atsushi Nakagawa, and Naoyuki Taniguchi
\n Glycobiology<\/em>, 17<\/strong>, 455-466 (2007)<\/p>\n

The Crystal Structure of a Virus-like Particle from the Hyperthermophilic ArchaeonPyrococcus furiosus<\/em> Provides Insight into the Evolution of Viruses
\n Fusamichi Akita, Khoon Tee Chong, Hideaki Tanaka, Eiki Yamashita, Naoyuki Miyazaki, Yuichiro Nakaishi, Mamoru Suzuki, Kazunori Namba, Yasuko Ono, Tomitake Tsukihara, and Atsushi Nakagawa
\n Journal of Molecular Biology<\/em>, 368<\/strong>(5), 1469-1483 (2007)<\/p>\n

Structural Mechanism and Photoprotective Function of Water-soluble Chlorophyll-binding Protein
\n Daisuke Horigome, Hiroyuki Satoh, Nobue Itoh, Katsuyoshi Mitsunaga , Isao Oonishi, Atsushi Nakagawa, and Akira Uchida
\n Journal of Biological Chemistry<\/em>, 282<\/strong>, 6525-6531 (2007)<\/p>\n

Structural diversity in the cytoplasmic region of G protein-gated inward rectifier K+<\/sup> channel
\n Atsushi Inanobe, Takanori Matsuura, Atsushi Nakagawa A, Yoshihisa Kurachi
\n Channels<\/em>, 1<\/b>(1), 39-45 (2007)<\/p>\n

2006<\/h3>\n

<\/a>Crystal structure of DsbB-DsbA complex reveals a mechanism of disulfide bond generation
\n Kenji Inaba, Satoshi Murakami, Mamoru Suzuki, Atsushi Nakagawa, Eiki Yamashita,Kengo Okada, and Koreaki Ito
\n Cell<\/em>, 127<\/strong>, 789-801 (2006)<\/p>\n

Conformation of Amyloid Fibrils of b2-Microglobulin Probed by Tryptophan Mutagenesis
\n Miho Kihara, Eri Chatani, Kentaro Iwata, Kaori Yamamoto, Takanori Matsuura, Atsushi Nakagawa, Hironobu Naiki, Yuji Goto
\n Journal of Biological Chemistry<\/em>, 281<\/strong>(41), 31061-31069 (2006)<\/p>\n

Orexin-A is composed of a highly conserved C-terminal and a specific, hydrophilic N-terminal region, revealing the structural basis of specific recognition by the orexin-1 receptor
\n Tomoyo Takai, Takao Takaya, Mutsuko Nakano, Hideo Akutsu, Atsushi Nakagawa,, Saburo Aimoto, Katsuya Nagai, Takahisa Ikegami
\n Journal of Peptide Science<\/em>, 12<\/strong>(7), 443-454 (2006)<\/p>\n

Targeting AMAP1 and cortactin binding bearing an atypical SH3\/proline interface for prevention of breast cancer invasion and metastasis
\n Hashimoto, S., Hirose, M., Hashimoto, A., Morishige, M., Yamada, A., Hosaka, H., Akagi, K., Ogawa, E., Oneyama, C., Agatsuma, T., Okada, M., Kobayashi, H., Wada, H., Nakano, H., Ikegami, T., Nakagawa, A., and Sabe, H.
\n Proceedings of the National Academy of Science USA<\/em>, 103<\/strong>, 7036-7041 (2006)<\/p>\n

Crystallization and preliminary X-ray analysis of rat SHPS-1
\n Aki Nagata, Hiroshi Ohnishi, Masato Yoshimura, Akira Ogawa, Sayuri Ujita, Hiroaki Adachi, Masato Okada, Takashi Matozaki, and Atsushi Nakagawa
\n Acta Crystallographica sect. F<\/em>, 62<\/strong>, 189-191 (2006)<\/p>\n

2005<\/h3>\n

Crystallization and preliminary X-ray diffraction analysis of a chitin-binding domain of hyperthermophilic chitinase from Pyrococcus furiosus
\n <\/em>Tsutomu Nakamura, Kazuhiko Ishikawa, Yoshihisa Hagihara, Takashi Oku, Atsushi Nakagawa, Tsuyoshi Inoue, Mitsuo Ataka, and Koichi Uegaki
\n Acta Crystallographica sect. F<\/em>, 61<\/strong>, 476-478 (2005)<\/p>\n

Crystallization and preliminary X-ray analysis of hyperthermophilic L-threonine dehydrogenase from the archaeon Pyrococcus furiosus
\n <\/em>Noriko Higashi, Takanori Matsuura, Atsushi Nakagawa, and Kazuhiko Ishikawa
\n Acta Crystallographica sect. F<\/em>, 61<\/strong>, 432-434 (2005)<\/p>\n

Crystal structure of lipoate-protein ligase A from Escherichia coli<\/em>: Determination of the lipoic acid-binding site
\n Kazuko Fujiwara, Sachiko Toma, Kazuko Okamura-Ikeda,Yutaro Motokawa, Atsushi Nakagawa, and Hisaaki Taniguchi
\n Journal of Biological Chemistry<\/em>, 280<\/strong>, 33645-33651 (2005)<\/p>\n

Crystal structure of human T-protein of glycine cleavage system at 2.0\u00c5 resolution and its implication for understanding non-ketotic hyperglycinemia.
\n Okamura-Ikeda K., Hosaka H., Yoshimura M., Yamashita E., Toma S., Nakagawa A., Fujiwara K., Motokawa Y., and Taniguchi H.
\n Journal of Molecular Biology<\/em>, 351<\/strong>(5), 1146-1159 (2005)<\/p>\n

Using cryoloops for X-ray data collection from protein crystals at room temperature: A simple applicable method
\n Shu Jie Li, Mamoru Suzuki, Atsushi Nakagawa
\n Journal of Crystal Growth, 281<\/strong>, 592-595 (2005)<\/p>\n

Ab initio<\/em> crystal structure determination of spherical viruses that exhibit a centrosymmetric location in the unit cell
\n Taka, J., Naitow, H., Yoshimura, M., Miyazaki, N., Nakagawa, A. and T. Tsukihara
\n Acta Crystallographica sect. D<\/em>, 61<\/strong>, 1099-1106 (2005)<\/p>\n

Expression and molecular characterization of spherical particles derived from the genome of the hyperthermophilic euryarchaeote,Pyrococcus furiosus
\n <\/em>Kazunori Namba, Kyoji Hagiwara, Hideaki Tanaka, Yuichiro Nakaishi, Khoon Tee Chong, Eiki Yamashita, George Enyimah Armah, Yasuko Ono, Yoshizumi Ishino, Toshihiro Omura, Tomitake Tsukihara, and Atsushi Nakagawa
\n Journal of Biochemistry<\/em>, 138<\/strong>(2), 193-199 (2005)<\/p>\n

A solubility and B-factor minimum of hen egg-white lysozyme crystals at 0.5 M concentration NiCl2<\/sub>
\n Shu Jie Li, Takanori Matsuura, Hideaki Tanaka, Atsushi Nakagawa, Tomitake Tsukihara, and Mitsuo Ataka
\n Journal of Crystal Growth<\/em>, 276<\/strong>, 222-229 (2005)<\/p>\n

The crystal structures of semi-synthetic aequorins
\n Sachiko Toma, Khoon Tee Chong, Atsushi Nakagawa, Katsunori Teranishi, Satoshi Inouye, and Osamu Shimomura
\n Protein Science<\/em>, 14<\/strong>, 409-416 (2005)<\/p>\n

Transcapsidation and the conserved interactions of two major structural proteins of a pair of phytoreoviruses confirm the mechanism of assembly of the outer capsid layer
\n Naoyuki Miyazaki, Kyoji Hagiwara, Hisashi Naitow, Takahiko Higashi, R. Holland Cheng, Tomitake Tsukihara, Atsushi Nakagawa, and Toshihiro Omura
\n Journal of Molecular Biology<\/em>, 345<\/strong>, 229-237 (2005)<\/p>\n

2004<\/h3>\n

The three-dimensional structure of aspergilloglutamic peptidase from Aspergillus niger<\/em>
\n Hiroshi Sasaki, Atsushi Nakagawa, Tomonari Muramatsu, Megumi Suganuma, Yoriko Sawano, Masaki Kojima, Keiko Kubota, Kenji Takahashi, and Masaru Tanokura
\n Proceedings of the Japan Academy<\/em>, 80(B)<\/strong>, 435-438 (2004)<\/p>\n

Crystal structure of the drug-discharge outer membrane protein, OprM, of Pseudomonas aeruginosa<\/em>: Dual modes of membrane anchoring and occluded cavity end
\n Hiyroyuki Akama, Misa Kanemaki, Masato Yoshimura, Tomitake Tsukihara, Tomoe Kashiwagi, Hiroshi Yoneyama, Shin-ichiro Narita, Atsushi Nakagawa, and Taiji Nakae
\n Journal of Biological Chemistry,<\/em>279<\/strong>, 52816-52819 (2004)<\/p>\n

Ni2+<\/sup> binds to active site of hen egg-white lysozyme and quenches fluorescence of Trp62 and Trp108
\n Shu Jie Li, Atsushi Nakagawa, and Tomitake Tsukihara
\n Biochemical and Biophysical Research Communications<\/em>, 324<\/strong>, 529-533 (2004)<\/p>\n

Structure of human erythrocyte NADH-cytochrome b<\/em>5<\/sub> reductase
\n Sachiko Bando, Tsunehiro Takano, Toshitsugu Yubisui, Komei Shirabe, Masazumi Takeshita, and Atsushi Nakagawa
\n Acta Crystallographica sect. D<\/em>, 60<\/strong>, 1929-1934 (2004)<\/p>\n

Crystal Structure of the Hemolytic Lectin CEL-III Isolated from the Marine InvertebrateCucumaria echinata
\n <\/em>Tatsuya Uchida, Takeyuki Yamazaki, Seiichiro Eto, Hajime Sugawara, Genji Kurisu, Atsushi Nakagawa, Masami Kusunoki, and Tomomitsu Hatakeyama
\n Journal of Biological Chemistry<\/em>, 279<\/strong>, 37133-37141 (2004)<\/p>\n

Crystal Structure of the Membrane Fusion Protein, MexA, of the Multidrug Transporter inPseudomonas aeruginosa
\n <\/em>Hiroyuki Akama, Takanori Matsuura, Sachiko Kashiwagi, Hiroshi Yoneyama, Shin-ichiro Narita, Tomitake Tsukihara, Atsushi Nakagawa, and Taiji Nakae
\n Journal of Biological Chemistry<\/em>, 279<\/strong>, 25939-25942 (2004)<\/p>\n

Structure of rat monoamine oxidase A and its specific recognitions for substrates and inhibitors
\n Jichun Ma, Masato Yoshimura, Eiki Yamashita , Atsushi Nakagawa , Akio Ito, and Tomitake Tsukihara
\n Journal of Molecular Biology<\/em>, 338<\/strong>, 103-114 (2004)<\/p>\n

The Amino-Terminal Region of Major Capsid Protein P3 Is Essential for Self-Assembly of Single-Shelles Core-Like Particles of Rice Dwarf Virus
\n <\/em>Kyoji Hagiwara, Takahiko Higashi, Naoyuki Miyazaki, Hisashi Naitow, R. Holland Cheng, Atsushi Nakagawa, Hiroshi Mizuno, Tomitake Tsukihara, and Toshihiro Omura
\n Journal of Virology<\/em>, 78<\/strong>, 3145-3148 (2004)<\/p>\n

2003<\/h3>\n

The Structure of Importin-b<\/span> Bound to SREBP-2: Nuclear Import of a Transcription Factor
\n Soo Jae Lee, Toshihiro Sekimoto, Eiki Yamashita, Emi Nagoshi,Atsushi Nakagawa, Naoko Imamoto, Masato Yoshimura, Hiroaki Sakai, Khoon Tee Chong, Tomitake Tsukihara, and Yoshihiro Yoneda
\n Science<\/em>, 302<\/strong>, 1571-1575 (2003)<\/p>\n

Crystallization and preliminary crystallographic analysis of importin-b<\/span>-SREBP-2 complex
\n Soo Jae Lee, Toshihiro Sekimoto, Eiki Yamashita, Emi Nagoshi, Atsushi Nakagawa, Hideaki Tanaka, Yoshihiro Yoneda, and Tomitake Tsukihara
\n Acta Crystallographica sect. D<\/em>, 59<\/strong>, 1866-1868 (2003)<\/p>\n

The Atomic Structure of Rice dwarf<\/em> Virus reveals the Self-Assembly Mechanism of Component Proteins
\n Atsushi Nakagawa, Naoyuki Miyazaki, Junichiro Taka, Hisashi Naitow, Akira Ogawa, Zui Fujimoto, Hiroshi Mizuno, Takahiko Higashi, Yasuo Watanabe, Toshihiro Omura, R. Holland Cheng, and Tomitake Tsukihara
\n Structure<\/em>, 11<\/strong>, 1227-1238 (2003)<\/p>\n

2002<\/h3>\n

Structure of the Carboxyl-terminal Src Kinase, Csk
\n Akira Ogawa, Yoshiharu Takayama, Hiroaki Sakai, Khoon Tee Chong, Satoru Takeuchi, Atsushi Nakagawa, Shigeyuki Nada, Masato Okada, and Tomitake Tsukihara
\n The Journal of Biological Chemistry<\/em>, 277<\/strong>, 14351-14354 (2002)<\/p>\n

2001<\/h3>\n

Entropic Stabilization of the Tryptophan Synthase a<\/span>-Subunit from a Hyperthermophile,Pyrococcus furiosus<\/em>: X-ray Analysis and Calorimetry
\n Yuriko Yamagata, Kyoko Ogasahara, Yusaku Hioki, Soo Jae Lee, Atsushi Nakagawa, Haruki Nakamura, Masami Ishida, Seiki, Kuramitsu, and Katsuhide Yutani
\n J<\/em>ournal of<\/em> Biological Chemistry<\/em>, 276<\/strong>, 11062-11071 (2001)<\/p>\n

2000<\/h3>\n

Crystal Structure of 1-Aminocyclopropane-1-carboxylate Deaminase from Hansenula saturnus
\n <\/em>Min Yao, Toyoyuki Ose, Hiroshi Sugimoto, Atsushi Horiuchi, Atsushi Nakagawa, Soichi Wakatsuki, Daisuke Yokoi, Toyotaka Murakami, Mamoru Honma, and Isao Tanaka
\n Journal of Biological <\/em>Chemistry<\/em>, 275<\/strong>, 34557-34565 (2000)<\/p>\n

The Adoption of a Twisted Structure of Importin-b<\/span> Is Essential for the Protein-protein Interaction Required for Nuclear Transport
\n Soo Jae Lee, Naoko Imamoto, Hiroaki Sakai, Atsushi Nakagawa, Shingo Kose, Makiko Koike, Masaki Yamamoto, Takashi Kumasaka, Yoshihiro Yoneda, and Tomitake Tsukihara
\n Journal of Molecular Biology<\/em>, 302<\/strong>, 251-264 (2000)<\/p>\n

The Structure of Human MRP8, A Member of the S100 Calcium-binding Protein Family, by MAD Phasing at 1.9 \u00c5 Resolution
\n Kohtaro Ishikawa, Atsushi Nakagawa, Isao Tanaka, Masaki Suzuki, and Jun Nishihira
\n Acta Crystallographica sect. D<\/em>, 56<\/strong>, 559-566 (2000)<\/p>\n

Structure and Thermodynamics of the Extraordinarily Stable Molten Globule State of Canine Milk Lysozyme
\n Takumi Koshiba, Min Yao, Yoshihiro Kobashigawa, Makoto Demura, Atsushi Nakagawa, Isao Tanaka, Kunihiro Kuwajima, and Katsutoshi Nitta
\n Journal of Biochemistry<\/em>, 39<\/strong>, 3248-3257 (2000)<\/p>\n

1999<\/h3>\n

Magnesium(II) and Zinc(II)-Protoporphyrin IX\u2019s Stabilize the Lowest Oxygen Affinity State of Human Hemoglobin Even More Strongly than Deoxyheme
\n Gentaro Miyazaki, Hideki Morimoto, Kyung-Mook Yun, Sam-Yong Park, Atsushi Nakagawa, Hirotaka Minagawa, and Naoya Shibayama
\n Journal of Molecular Biology<\/em>, 292<\/strong>, 1121-1136 (1999)<\/p>\n

Crystal Structure of a Ribonuclease from the Seeds of Bitter Gourd (Momordica charantia<\/em>) at 1.75 \u00c5 Resolution
\n Atsushi Nakagawa, Isao Tanaka, Ritsu Sakai, Takashi Nakashima, Gunki Funatsu, and Makoto Kimura
\n Biochimica et Biophysica Acta<\/em>, 1433<\/strong>, 253-260 (1999)<\/p>\n

The Three-Dimensional Structure of the RNA-Binding Domain of Ribosomal Protein L2; A Protein at the Peptidyl Transferase Center of the Ribosome
\n Atsushi Nakagawa, Takashi Nakashima, Masae Taniguchi, Harumi Hosaka, Makoto Kimura, and Isao Tanaka
\n EMBO Journal<\/em>, 18<\/strong>, 1459-1467 (1999)<\/p>\n

High-Resolution Crystals of the HU Mutant K38N from Bacillus stearothermophilus
\n <\/em>Takahiro Tominaga, Atsushi Nakagawa, Isao Tanaka, Shunsuke Kawamura, and Makoto Kimura
\n Journal of Structural Biology<\/em>, 125<\/strong>, 86-89 (1999)<\/p>\n

Crystal Structure of Human D-Dopachrome Tautomerase, a Homologue of Macrophage Migration Inhibitory Factor, at 1.54 A\u00b0 Resolution
\n Hiroshi Sugimoto, Masae Taniguchi, Atsushi Nakagawa, Isao Tanaka, Masaki Suzuki, and Jun Nishihira
\n Biochemistry<\/em>, 38<\/strong>, 3268-3279 (1999)<\/p>\n

1998<\/h3>\n

Crystallization and Preliminary X-Ray Crystallographic Study of a 23S rRNA Binding Domain of the Ribosomal Protein L2 from Bacillus stearothermophilus<\/em>
\n Takashi Nakashima, Makoto Kimura, Atsushi Nakagawa, and Isao Tanaka
\n Journal of Structural Biology<\/em>, 124<\/strong>, 99-101 (1998)<\/p>\n

Matching the Crystallographic Structure of Ribosomal Protein S7 to a Three-Dimensional Model of the 16S Ribosomal RNA
\n Isao Tanaka, Atsushi Nakagawa, Harumi Hosaka, Soichi Wakatsuki, Florian Mueller, and Richard Brimacombe
\n RNA<\/em>, 4<\/strong>, 542-550 (1998)<\/p>\n

Molecular Cloning of Human D-Dopachrome Tautomerase cDNA: N-terminal Proline Is Essential for Enzyme Activation
\n Jun Nishihira, Mami Fujinaga, Takeshi Kuriyama, Masaki Suzuki, Hiroshi Sugimoto, Atsushi Nakagawa, Isao Tanaka, and Masaharu Sakai
\n Biochemical and Biophysical Research Communications<\/em>, 243<\/strong>, 538-544 (1998)<\/p>\n

1997<\/h3>\n

Crystallization and Preliminary X-Ray Studies of Two Serine Proteinase Inhibitors, BGIA and BGIT, from the Seeds of Bitter Gourd
\n Hidemasa Kondo, Jin Nakanose, Atsushi Nakagawa, Isao Tanaka, Makoto Kimura, and Gunki Funatsu
\n Journal of Structural Biology<\/em>, 120<\/strong>, 204-206 (1997)<\/p>\n

Crystallization and Preliminary X-Ray Crystallographic Study of the Ribosomal Protein S7 from Bacillus stearothermophilus
\n <\/em>Nao Harada, Kazunari Sano, Makoto Kimura, Harumi Hosaka, Atsushi Nakagawa, and Isao Tanaka
\n Journal of Structural Biology<\/em>, 120<\/strong>, 112-114 (1997)<\/p>\n

Crystallization and Preliminary X-ray Analysis of Human D-Dopachrome Tauromerase
\n Hiroshi Sugimoto, Masae Taniguchi, Atsushi Nakagawa, Isao Tanaka, Masaki Suzuki, and Jun Nishihira
\n Journal of Structural Biology<\/em>, 120<\/strong>, 105-108 (1997)<\/p>\n

Crystal Structure of Nitric Oxide Reductase from Denitrifying Fungus Fusarium oxysporum
\n <\/em>Sam-Yong Park, Hideaki Shimizu, Shin-ichi Adachi, Atsushi Nakagawa, Isao Tanaka, Kazuhiko Nakahara, Hirofumi Shoun, Eiji Obayashi, Hiro Nakamura, Tetsutaro Iizuka, and Yoshitsugu Shiro
\n Nature Structural Biology<\/em>, 4<\/strong>, 827-832 (1997)<\/p>\n

Ribosomal Protein S7: A New RNA-Binding Motif with Structural Similarities to a DNA Architectural Factor
\n Harumi Hosaka, Atsushi Nakagawa, Isao Tanaka, Nao Harada, Kazunari Sano,Makoto Kimura, Min Yao, and Soichi Wakatsuki
\n Structure<\/em>, 5<\/strong>, 1199-1208 (1997)<\/p>\n

Crystallization, Preliminary Diffraction and Electron Paramagnetic Resonance Studies of A Single Crystal of Cytochrome P<\/em>450nor
\n Sam-Yong Park, Hideaki Shimizu, Shin-ichi Adachi, Yoshitsugu Shiro, Tetsuro Iizuka, Atsushi Nakagawa, Isao Tanaka, Hirofumi Shoun, and Hiroshi Hori
\n FEBS Letters<\/em>, 412<\/strong>, 346-350 (1997)<\/p>\n

Escherichia coli<\/em> Positive Regulator OmpR Has a Large Loop Structure at the Putative RNA Polymerase Interaction Site
\n Hidemasa Kondo, Atsushi Nakagawa, Jun Nishihira, Yoshifumi Nishimura, Takeshi Mizuno, and Isao Tanaka
\n Nature Structural Biology<\/em>, 4<\/strong>, 28-31 (1997)<\/p>\n

1996<\/h3>\n

<\/a>Crystal Structure of Macrophage Migration Inhibitory Factor from Human Lymphocyte at 2.1\u00c5 Resolution
\n Hiroshi Sugimoto, Mamoru Suzuki, Atsushi Nakagawa, Isao Tanaka, and Jun Nishihira
\n FEBS Letters<\/em>, 389<\/strong>, 145-148 (1996)<\/p>\n

How Coenzyme B12<\/sub> Radicals Are Generated: The Crystal Structure of Methylmalonyl-coenzyme A Mutase at 2 \u00c5 Resolutions
\n Filippo Mancia, Nicholas H. Keep, Atsushi Nakagawa, Peter F. Leadlay, Sean McSweeney, Bjarne Rasmussen, Peter Bo\u00a8secke, Olivier Diat, and Philip R. Evans
\n Structure<\/em>, 4<\/strong>, 339-350 (1996)<\/p>\n

Crystal Structure of The Macrophage Migration Inhibitory Factor from Rat Liver
\n Mamoru Suzuki, Hiroshi Sugimoto, Atsushi Nakagawa, Isao Tanaka, Jun Nishihira, and Masaharu Sakai
\n Nature Structural Bioogy<\/em>, 3<\/strong>, 259-266 (1996)<\/p>\n

High-resolution Crystal Structure of Magnesium(MgII)-Iron(FeII) Hybrid Hemoglobin with Liganded Beta Subunits
\n Sam-Yong Park, Atsushi Nakagawa, and Hideki Morimoto
\n Journal of Molecular Biology,<\/em>255<\/strong>, 726-734 (1996)<\/p>\n

1995<\/h3>\n

<\/a>Crystallization of Rat Liver Macrophage Migration Inhibitory Factor (MIF) for MAD Analysis
\n Hiroshi Sugimoto, Mamoru Suzuki, Atsushi Nakagawa, Isao Tanaka, Mami Fujinaga, and Jun Nishihira
\n Journal of Structural Biology<\/em>, 115<\/strong>, 331-334 (1995)<\/p>\n

Weissenberg Camera for Macromolecules with Imaging Plate Data Collection System at The Photon Factory: Present Status and Future Plan
\n Noriyoshi Sakabe, Shinji Ikemizu, Kiwako Sakabe, Tsuneyuki Higashi, Atsushi Nakagawa, Nobuhisa Watanabe, Shin-ichi Adachi, and Kyoyu Sasaki
\n Reviews in Scientific Instruments<\/em>, 66 (2)<\/strong>, 1276-1281 (1995)<\/p>\n

XVIEWER – An Interactive Image Processing of Diffraction Data from the Weissenberg Camera for Macromolecular Crystallography<\/p>\n

1994<\/h3>\n

<\/a>Isao Fujii, Noriaki Hirayama, Yukio Morimoto, Atsushi Nakagawa, Yoshiki Higuchi, and Noritake Yasuoka
\n Bioimages<\/em>, 2<\/strong>, 47-52 (1994)<\/p>\n

Flavocommelin Octaacetate
\n Yuji Ohsawa, Shigeru Ohba, Seiji Kosemura, Shosuke Yamamura, Atsushi Nakagawa, Kumi Yohida, Tadao Kondo
\n Acta Crystallographica sect.<\/em>C<\/em>, 50<\/strong>, 645-648 (1994)<\/p>\n

1992<\/h3>\n

Structural Studies of Proteins from Sulfate-Reducing Bacteria
\n Noritake Yasuoka, Yoshiki Higuchi, Yukio Morimoto, Atsushi Nakagawa, Hiroo Inokuchi, and Tatsuhiko Yagi
\n Proceedings of The Second R.O.C.-Japan Joint seminar On Crystallography, pp.203-212 (1992)<\/p>\n

The Weissenberg Method for the Collection of X-ray Diffraction from Macromolecular Crystals: Modification to the Data-Processing Program WEIS
\n Barry A. Fields, J. Mitchell Guss, Michael C. Lawrence, and Atsushi Nakagawa
\n Journal of Applied Crystallography<\/em>, 25<\/strong>, 809-811 (1992)<\/p>\n

Structural Basis of Blue-Colour Development in Flower Petals from Commelina communis
\n <\/em>Tadao Kondo, Kumi Yoshida, Atsushi Nakagawa, Takatoshi Kawai, Hirotoshi Tamura, and Toshio Goto
\n Nature<\/em>, 358<\/strong>, 515 – 518 (1992)<\/p>\n

Crystallization and Preliminary X-ray Investigation of Proteinase A, a Non-Pepsin-Type Acid Protease from Aspergillus niger var.<\/em> macrosporus
\n Masaru Tanokura, Hidemi Matsuzaki, So Iwata, Atsushi Nakagawa, Toru Hamaya, Toshio Takizawa, and Kenji Takahashi
\n Journal of Molecular Biology<\/em>, 223<\/strong>, 373 – 375 (1992)<\/p>\n

1990<\/h3>\n

S-Class Cytochromes c<\/em> Have A Variety of Folding Patterns : Structure of Cytochrome c<\/em>\u2010553 from D. vulgaris<\/em> Determined By The Multi-wavelength Anomalous Dispersion Method
\n Atsushi Nakagawa, Yoshiki Higuchi, Noritake Yasuoka, Yukiteru Katsube, and Tatsuhiko Yagi
\n Journal of Biochemistry (Tokyo)<\/em>, 108<\/strong>, 701-703 (1990)<\/p>\n

1989<\/h3>\n

New Multipole Wiggler\/Undulator Beamline (BL-16) at the Photon Factory
\n Tadashi Matsushita, Hideki Maezawa, Tetsuya Ishikawa, Masaharu Nomura, Atsushi Nakagawa, Akira Mikuni, Yasuji Muramatsu, Yoshinori Satow, Takashi Kosuge, Shigeru Sato, T.Koide, Norikazu Kanaya, Seiji Asaoka, and Ichiro Nagakura
\n Reviews in Scientific Instruments, 60(7)<\/strong>, 1874-1876 (1989)<\/p>\n

1988<\/h3>\n

Design and Performance of an Imaging Plate System for X-ray Diffraction Study
\n Yoshiyuki Amemiya, Tadashi Matsushita, Atsushi Nakagawa, Yoshinori Satow, Junji Miyahara, and Jun-ichi Chikawa
\n Nuclear Instruments and Methods in Physics Research<\/em>, A266<\/strong>, 645-653 (1988)<\/p>\n

1986<\/h3>\n

Crystallographic Study of Cytochrome c<\/em>553 from Desulfovibrio vulgaris<\/em> Miyazaki
\n Atsushi Nakagawa, Etsuro Nagashima, Yoshiki Higuchi, Masami Kusunoki, Yoshiki Matsuura, Noritake Yasuoka, Yukiteru Katsube, Hideaki Chihara, and Tatsuhiko Yagi
\n Journal of Biochemistry (Tokyo)<\/em>, 99<\/strong>, 605-606 (1986)<\/p>\n","protected":false},"excerpt":{"rendered":"

2011 Kohei TAKESHITA, Isao SUETAKE, Eiki YAMASHITA, Michihiro SUGA, Hirotaka NARITA, Atsushi NAKAGAWA, and Sho […]<\/p>\n","protected":false},"author":1,"featured_media":0,"parent":424,"menu_order":0,"comment_status":"closed","ping_status":"closed","template":"","meta":{"_locale":"en_US","_original_post":"380","footnotes":""},"class_list":["post-428","page","type-page","status-publish","hentry","en-US"],"_links":{"self":[{"href":"http:\/\/www.protein.osaka-u.ac.jp\/rcsfp\/supracryst\/wp-json\/wp\/v2\/pages\/428","targetHints":{"allow":["GET"]}}],"collection":[{"href":"http:\/\/www.protein.osaka-u.ac.jp\/rcsfp\/supracryst\/wp-json\/wp\/v2\/pages"}],"about":[{"href":"http:\/\/www.protein.osaka-u.ac.jp\/rcsfp\/supracryst\/wp-json\/wp\/v2\/types\/page"}],"author":[{"embeddable":true,"href":"http:\/\/www.protein.osaka-u.ac.jp\/rcsfp\/supracryst\/wp-json\/wp\/v2\/users\/1"}],"replies":[{"embeddable":true,"href":"http:\/\/www.protein.osaka-u.ac.jp\/rcsfp\/supracryst\/wp-json\/wp\/v2\/comments?post=428"}],"version-history":[{"count":2,"href":"http:\/\/www.protein.osaka-u.ac.jp\/rcsfp\/supracryst\/wp-json\/wp\/v2\/pages\/428\/revisions"}],"predecessor-version":[{"id":866,"href":"http:\/\/www.protein.osaka-u.ac.jp\/rcsfp\/supracryst\/wp-json\/wp\/v2\/pages\/428\/revisions\/866"}],"up":[{"embeddable":true,"href":"http:\/\/www.protein.osaka-u.ac.jp\/rcsfp\/supracryst\/wp-json\/wp\/v2\/pages\/424"}],"wp:attachment":[{"href":"http:\/\/www.protein.osaka-u.ac.jp\/rcsfp\/supracryst\/wp-json\/wp\/v2\/media?parent=428"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}