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Workshop on Biomolecular Design and Simulations

Overview

This workshop will explore recent advances in biomolecular design, molecular simulations, protein engineering, and AI-assisted computational and experimental approaches. Researchers from diverse fields will present emerging methodologies and applications that are transforming our understanding and design of biological molecules.

Date: Thursday, 26 November 2026

Time: 12:25–18:00

Venue: Institute for Protein Research, The University of Osaka

3-2 Yamadaoka, Suita, Osaka 565-0871, Japan

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Program

  • Opening
  • Session 1Molecular Design 1
  • Richard BaylissUniversity of LeedsDesigning Proteins to Control Cell Signalling
  • Junichi TakagiInstitute for Protein Research, The University of OsakaAcquisition of novel functions by loop-grafting; no AI required!
  • Nobuyasu KogaInstitute for Protein Research, The University of OsakaDesign of Functional Proteins using Readymade Scaffolds
  • Break
  • Session 2Molecular Design 2
  • Yohei YokobayashiOISTDesigning RNAs that function in test tubes and living cells
  • Shunsuke TagamiRIKEN Center for Integrative Medical Sciences (IMS)Reconstruction of a minimal RNA polymerase
  • Hirohide SaitoInstitute for Quantitative Biosciences (IQB), The University of TokyoEngineering RNA to Program Cellular Functions and Cell Fate
  • Break
  • Session 3AI-based Simulation
  • Akira ShinoharaInstitute for Protein Research, The University of OsakaAlphaFold3-based prediction of intermediates in DNA exchange reaction: Toward the redesign of a new recombinase
  • Mariko OkadaInstitute for Protein Research, The University of OsakaBridging Molecular and Cellular Simulations to Control Cell Fate
  • Break
  • Discussion
  • Closing

Organizers

  • Richard BaylissFaculty of Biological Sciences, University of Leeds
  • Nobuyasu KogaInstitute for Protein Research, The University of Osaka
  • Mariko OkadaInstitute for Protein Research, The University of Osaka

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