Welcome to mDCC tools’s documentation!

• Introduction
  • What is mDCC?
  • mDCC tools
  • Installation
  • License
• Tutorial 1: Engeneered Endothelin-1 peptide dimer
  • System
  • Preparation
  • Pattern recognition
  • Assigning the trajectory on the patterns
  • Calculating the mDCC
  • Calculating the conventional DCC
  • Calculating the interatomic distance
  • Gathering the data into SQLite database
  • Visualizing the data with R
  • Network analysis
  • About computation times
• Tutorial 2: Artificial 1D data
  • Preparation
  • Pattern recognition
  • Assigning the trajectory on the patterns
  • Calculating the mDCC and DCC
  • Results
• Data format
  • .trrmdcc format
• Appendix: Additional information for the installation
  • Installation of various dependencies for mDCC