Achievements

2025

Research papers

De novo design of ATPase based on a blueprint optimized for harboring the P-loop motif

T. Kosugi, M. Tanabe, N. Koga

Protein Science, 34(6): e70132 (2025) 10.1002/pro.70132

Development and Production of Moderate-Thermophilic PET Hydrolase for PET Bottle and Fiber Recycling

T. Matsuzaki, T. Saeki, F. Yamazaki, N. Koyama, T. Okubo, D. Hombe, Y. Ogura, Y. Hashino, R. Tatsumi-Koga, N. Koga, R. Iino, A. Nakamura

ACS Sustainable Chemistry & Engineering, 13(27), 10404-10417 (2025) 10.1021/acssuschemeng.5c01602

An attention-based deep neural network model to detect cis-regulatory elements at the single-cell level from multi-omics data

K. Murakami, K. Iida, M. Okada

Genes to Cells, 30:e70000 (2025)10.1111/gtc.70000

Protein Data Bank Japan: Computational resources for analysis of protein structures

G.-J.Bekker, C. Nagao, M. Shirota, T. Nakamura, T. Katayama, D. Kihara, K. Kinoshita, G. Kurisu

Journal of Molecular Biology, in press10.1016/j.jmb.2025.169013

Protein Data Bank Japan: Improved tools for sequence‐oriented analysis of protein structures

G.-J. Bekker, C. Nagao, M. Shirota, T. Nakamura, T. Katayama, D. Kihara, K. Kinoshita, G. Kurisu

Protein Science, 34(3), 202510.1002/pro.70052

BPS2025 – SUPREM: An engineered non-site-specific m6A RNA methyltransferase with highly improved efficiency

Y. Ochiai, B. E. Clifton, M. L. Coz, M. Terenzio, P. Laurino

Biophysical Journal, Volume 124, Issue 3, 370a – 371a10.1016/j.bpj.2024.11.2008

From duplication to fusion: Expanding Dayhoff’s model of protein evolution

Y. Abdillah Muthahari, L. Magnus, P. Laurino

Protein Science. 2025;34:e7005410.1002/pro.70054