NMRhub: An NMR Data Ecosystem Spanning the Complete Data Lifecycle

Mark W. Maciejewski, Kumaran Baskaran, Hongyang Yao, Hamid Eghbalnia, Genji Kurisu, Masashi Yokochi, Adam D. Schuyler, Christopher Bontempi, Jonathan R. Wedell, Gerard Weatherby, Harrison Burr, Yulia Pustovalova, Alexandra Pozhidaeva, Seenat Thongdee, Michael R. Gryk, Joseph M. Courtney, Qi Cheng, Michael P. Wilson, Ion I. Moraru, BerndSimon, R.Andrew Byrd, Laura Morris, John N. Glushka, John H. Grimes Jr, Mario Uchimiya, Alexander Eletsky, Abigail E. Moore, Alexander L. Paterson, Songlin Wang, Paulo R. Pinheiro, Boden Vanderloop, Miron Livny, KatherineHenzler-Wildman, Arthur S. Edison, Chad M. Rienstra, Jeffrey C. Hoch

Journal of Molecular Biology, Volume 438, Issue 18, 169769 (15 September 2026)

Ligand‐dependent transcriptional heterogeneity in cell cycle gene expression delays G1/S entry

Ririn Rahmala Febri, Ayaka Nagasato‐Ichikawa, Keita Iida, Shuhei Kimura, Akira Imamoto, Mariko Okada

FEBS Letters (21 August 2026)

CD4 CTLs in supercentenarians: Signs of adaptive expansion in healthy aging

Kosuke Hashimoto, Miki Kojima-Ishiyama, Hajime Inokuchi, Michihira Tagami, Takashi Sasaki, Kenji Mizuguchi, Yasushi Okazaki, Ichiro Taniuchi, Kazuyoshi Ishigaki, Nobuyoshi Hirose, Piero Carninci, Yasumichi Arai

Cell Reports (19 August 2026)

Uncovering the role of dimerization on dynamics and inhibitor stability in human versus Xenopus LTA4H

Gert-Jan Bekker, Sandhya P. Tiwari

Biophysical Journal (18 August 2026)

Pleuroparenchymal fibroelastosis-like findings identify an idiopathic pulmonary fibrosis subgroup with shortened telomeres and poor prognosis

Ryota Otoshi, Hideya Kitamura, Takashi Niwa, Kota Murohashi, Tsuneyuki Oda, Tomohisa Baba, Eri Hagiwara, Tae Iwasawa, Tamiko Takemura, Koji Okudela, Yosui Nojima Yoshinori Nakamura, Kenji Mizuguchi, Yayoi Natsume-Kitatani, Takashi Ogura

ERJ Open Research (27 July 2026)

Vapor-induced miscibility switching and optical response in a functional molecular liquid–pillar[5]arene system

Yosuke Tani, Keisuke Wada, Yuya Oshima, Takanori Nakane, Akihiro Kawamoto, Genji Kurisu, Takashi Tachikawa, Shunsuke Ohtani, Kenichi Kato, Tomoki Ogoshi

Chemical Science (21 July 2026)

Protein Data Bank (PDB) Archive: a new architecture (beta) for scalable, PDBx/mmCIF-based data distribution

Zukang Feng, Balakumaran Balasubramaniyan, Gert-Jan Bekker, Jose M. Duarte, Vladimir Guranovic, Jeremy Henry, Sreenath S. Nair, Ezra Peisach, Dennis W. Piehl, Aditya Pingale, James Smith, Brinda Vallat, Reiko Yamashita, Arthur Zalevsky, Kyle Morris, Jeff Hoch, Genji Kurisu, Sameer Velankar, Stephen K. Burleya, and Jasmine Y. Younga

Acta Crystallographica Section D Structural Biology, 82(8): 982-989 (17 July, 2026)

Development of an RNA aptamer as a therapeutic agent for synucleinopathies

Kazuma Murakami, Thi Hong Van Nguyen, Leo Tsuda, Esha Chawla, Yangxia Wang, Yiran Chen, Nadia Stefanova, Chioko Nagao, Kenji Mizuguchi, Shouvik Manna, Samir K. Maji, Hidehito Tochio, Gal Bitan

Nature Communications (15 July, 2026)

Crystalline 3D covalent organic frameworks with nbo topology

Soshi Hirota, Haruki Sugiyama, Nao Hirata, Sachiko Nakano, Junichi Usuba, Yuh Hijikata, Ryotaro Matsuda, Takanori Nakane, Akihiro Kawamoto, Genji Kurisu, Yasutomo Segawa

Science Advances (10 July 2026)

Protein Data Bank Japan: A unified portal for integrating structural and chemical data to explore protein–ligand interactions in PDB and PubChem

Gert-Jan Bekker, Chioko Nagao, Satomi Niwa, Genji Kurisu

Protein Science (08 July 2026)

A planar dimer of bovine ATP synthase

Chimari Jiko, Atsuki Nakano, Yosuke Teshirogi, Eiki Yamashita, Genji Kurisu, Daron Standley, Tohru Terada, Kaoru Mitsuoka, Ken Yokoyama, Christoph Gerle

Cell Death & Differentiation (03 July 2026)

Cell surface liposome binding (CLiB) allows lipid-binding probe engineering via high-throughput screening.

Taki Nishimura, Kotaro Tsuboyama, Yuki Nakagaki, Shiou-Ling Lu, Yuki Ishino, Nozomu Kono, Takeshi Noda, Eiji Yamamoto, Noboru Mizushima

Nature Cell Biology (02 July 2026)

Integrated phenotyping identifies reproducible prognostic subgroups in idiopathic pleuroparenchymal fibroelastosis

Ryota Otoshi, Hideya Kitamura, Tsuneyuki Oda, Akihiro Kanzawa, Ken Okamura, Takashi Niwa, Tomohisa Baba, Tae Iwasawa, Tamiko Takemura, Kenji Mizuguchi, Yayoi Natsume-Kitatani, Takashi Ogura

Respiratory Research (26 June 2026)

Real-time measurement of the ATG8 lipidation reaction by fluorescence spectroscopy.

Wenxin Zhang, Sharon A. Tooze, Taki Nishimura

Methods in Enzymology, 728: 327-345 (2026)

Stability-Driven Pose Prediction and Ligand Design via Contact Persistence Analysis from MD Simulations

Mochammad Arfin Fardiansyah Nasution, Gert-Jan Bekker, Suyong Re, Kenji Mizuguch

Computational and Structural Biotechnology Journal (29 May 2026)

Crystal structure determination of an FeII azo aldehyde complex [Fe(C14H11N2O3)2(H2O)2] by MicroED

Kazuki Ishikawa, Fumishi Yoshizawa, Reon Aihara, Norihito Funato, Daisuke Nakane, Takashiro Akitsu, Takanori Nakane, Akihiro Kawamoto, Genji Kurisu

Acta Crystallographica Section E Crystallographic Communications (12 May 2026)

In Silico Regression Modeling and Improved Interpretability To Predict the Transport Inhibitory Activity of Breast Cancer Resistance Protein

Kaoru Takadera, Donny Ramadhan, Reiko Watanabe, Kenji Mizuguchi

ACS Omega (21 April 2026)

Dual RAF inhibition outperforms RAF-MEK combinations for suppressing ERK signaling in KRAS mutant cells

Hiroaki Imoto, Nora Rauch, Ayaka Ichikawa Nagasato, Mariko Okada, Walter Kolch, Oleksii S. Rukhlenko, Boris N. Kholodenko

npj Systems Biology and Applications (15 April 2026)

Subset binding enables detection of multimodal patient subgroup patterns and drug target discovery in idiopathic pulmonary fibrosis

Yayoi Natsume-Kitatani, Mari N Itoh, Yoshito Takeda, Masataka Kuroda, Haruhiko Hirata, Kotaro Miyake, Takayuki Shiroyama, Yuya Shirai, Yoshimi Noda, Yuichi Adachi, Takatoshi Enomoto, Saori Amiya, Jun Adachi, Ryohei Narumi, Satoshi Muraoka, Takeshi Tomonaga, Sadao Kurohashi, Fei Cheng, Ribeka Tanaka, Shuntaro Yada, Eiji Aramaki, Shoko Wakamiya, Yi-An Chen, Akiko Fukagawa, Chihiro Higuchi, Yosui Nojima, Takeshi Fujiwara, Chioko Nagao, Toshihiro Takeda, Yasushi Matsumura, Kenji Mizuguchi, Atsushi Kumanogoh, Naonori Ueda

Briefings in Bioinformatics (14 April 2026)

Cryo-EM structure of Chlamydomonas reinhardtii Photosystem I complexed with cytochrome c6

Yu Ogawa, Gyana Prakash Mahapatra, Yuval Milrad, Michelle Schimpf, Genji Kurisu, Michael Hippler, Jan Michael Schuller

Nature Communications (27 March 2026)

Modulation of the Keap1–Nrf2 Pathway Using a Peptide Derived from Edible Mushrooms: In Silico and In Vitro Studies

Patamalai Boonserm, Papassara Sangtanoo, Thana Sutthibutpong, Hiran Anjana Ariyawansa, Suyong Re, Kenji Mizuguchi, Piroonporn Srimongkol, Aphichart Karnchanatat

Journal of Agriculture and Food Research (12 March 2026)

Literature-derived, context-aware gene regulatory networks improve biological predictions and mathematical modeling

Masato Tsutsui, Kiwamu Arakane, Mariko Okada

Bioinformatics (26 February 2026)

Inference of Genetic Networks from Pseudo Time Series of Single-cell Gene Expression Data using Modified Random Forests

Shuhei Kimura, Ryosuke Misaki, Masato Tokuhisa, Keita Iida, Mariko Okada

Bulletin of Mathematical Biology, 88(3) (21 February 2026)

Comparing domain-domain coupled motions in bHLH-PAS transcription factor complexes

Karthik Sudarsanam, Ashutosh Srivastava, Sandhya P. Tiwari

Biophysical Journal, 125(4): 31a-31a (19 February 2026)

Excitatory GABA receptors shape locomotor circuit organization in C. elegans

Xingran Wang, Kenji Mizuguchi, Kosuke Hashimoto

Scientific Reports (17 February 2026)

Network structures and parameters in multiscale modeling in ErbB signaling networks

Ai Shinobu, Ayaka Nagasato-Ichikawa, Mariko Okada

Current Opinion in Cell Biology (February 2026)

An R83W mutation in Rab3A causes autosomal-dominant cerebellar ataxia

Ryosuke Miyamoto, Ayuko Sakane, Hiroyuki Morino, Kodai Kume, Tomoyasu Matsubara, Tatsuya Fukumoto, Yusuke Osaki, Ryosuke Oki, Kenta Hanada, Konoka Tachibana, Masahito Nakataki, Yoshihiko Nishida, Yuji Takahashi, Kenji Mizuguchi, Shigeo Murayama, Yuko Saito, Hideshi Kawakami, Yoshimi Takai, Takuya Sasaki, Yuishin Izumi

Human Molecular Genetics (06 January 2026)