2011
Kohei TAKESHITA, Isao SUETAKE, Eiki YAMASHITA, Michihiro SUGA, Hirotaka NARITA, Atsushi NAKAGAWA, and Shoji TAJIMA
Structural insight into maintenance methylation by mouse DNA methyltransferase 1 (Dnmt1)
Proceedings of the National Academy of Science USA, 108, 9055-9059 (2011)
Fusamichi AKITA, Akifumi HIGASHIURA, Takumi SHIMIZU, Yingying PU, Mamoru SUZUKI, Tamaki UEHRARA-ICHIKI, Takahide SASAYA, Shuji KANAMARU, Fumio ARISAKA, Tomitake TSUKIHARA, Atsushi NAKAGAWA, and Toshihiro OMURA
Crystallographic analysis reveals octamerization of viroplasm matrix protein P9-1 of Rice black streaked dwarf virus
Journal of Virology, 86, 746-756 (2011)
Fusamichi AKITA, Naoyuki MIYAZAKI, Hiroyuki HIBINO, Takumi SHIMIZU, Akifumi HIGASHIURA, Tamaki UEHRARA-ICHIKI, Takahide SASAYA, Tomitake TSUKIHARA, Atsushi NAKAGAWA, Kenji IWASAKI, and Toshihiro OMURA
Viroplasm matrix protein Pns9 from rice gall dwarf virus forms an octameric cylindrical structure
Journal of General Virology, 92, 2214-2221 (2011)
Makoto MATSUDA, Kohei TAKESHITA, Tatsuki KUROKAWA, Souhei SAKATA, Mamoru SUZUKI, Eiki YAMASHITA, Yasushi OKAMURA, and Atsushi NAKAGAWA
Crystal structure of the cytoplasmic phosphatase and tensin homolog (PTEN)-like region of Ciona intestinalis voltage-sensing phosphatase provides insight into substrate specificity and redox regulation of the phosphoinositide phosphatase activity
The Journal of Biological Chemistry, 286, 23368-23377 (2011)
S. Salf HASAN, Eiki YAMASHITA, Christopher M. Ryan, Julian P. WHITELEGGE, William A. CRAMER
Conservation of lipid functions in cytochrome bc complexes
The Journal of Molecular Biology, 414, 145-162 (2011)
Atsushi INANOBE, Atsushi NAKAGAWA, and Yoshihisa KURACHI
Interactions of cations with the cytoplasmic pores of inward rectigier K+channels in the closed state
The Journal of Biological Chemistry, 286, 41801-41811 (2011)
So NAKAGAWA, Xiang-Qun GONG, Shoji MAEDA, Yuhua DONG, Yuko MISUMI, Tomitake TSUKIHARA, and Donglin BAI
Asparagine 175 of connexin32 is a critical residue for docking and forming functional heterotypic gap junction channels with connexin26
The Journal of Biological Chemistry, 286, 19672-19681 (2011)
Michihiro SUGA, Naomine YANO, Kazumasa MURAMOTO, Kyoko SHINZAWA-ITOH, Tomoko MAEDA, Eiki YAMASHITA, Tomitake TSUKIHARA, and Shinya YOSHIKAWA
Distinguishing between Cl- and O22- as the bridging element between Fe3+ and Cu2+ in resting-oxidized cytochrome c oxidase
Acta Crystallographica Section D, 67,742-744 (2011)
Eiki YAMASHITA, Atsushi NAKAGAWA, Junichi TAKAHASHI, Kin-ichi TSUNODA, Seiko YAMADA, and Shigeki TAKEDA
The host-binding domain of the P2 phage tail spike reveals a trimeric iron-binding structure
Acta Crystallographica Section F, 67, 837-841 (2011)
Jinsue SONG, Hyerim HONG, Saehae CHOI, Yong Hee LEE, Eiki YAMASHITA, Suk-Chul BAE, Il Yeong PARK, and Soo Jae LEE
Crystallization and preliminary X-ray crystallographic study of the human MST2 SARAH domain
Acta Crystallographica Section F, 67, 1403-1405 (2011)
Atsushi INANOBE, Takanori MATSUURA, Atsushi NAKAGAWA, and Yoshihisa KURACHI
Inverse agonist-like action of calcium on G-protein-gated inward-rectifier K+ channels
Biochemical and Biophysical Research Communications, 407, 366-371 (2011)
Ken-ichiro TAOKA, Izuru OHKI, Hiroyuki TSUJI, Kyoko FURUITA, Kokoro HAYASHI, Tomoko YANASE, Midori YAMAGUCHI, Chika NAKASHIMA, Yekti Asih Purwestri, Shojiro TAMAKI, Yuka OGAKI, Chihiro SHIMADA, Atsushi NAKAGAWA, Chojiro KOJIMA, and Ko SHIMAMOTO
14-3-3 proteins act as intracellular receptors for rice Hd3a florigen
Nature, 476, 332-335 (2011)
William A. CRAMER, S. Salf HASAN, and Eiki YAMASHITA
The Q cycle of chtochrome bc complexes: A structure perspective
Biochimica et Biophysica Acta-Bioenegetics, 1807, 788-802 (2011)
Narita, H., Nakagawa, A., Yamamoto, Y., Sakisaka, T., Takai, Y., and Suzuki, M.
Refolding, crystallization and preliminary X-ray crystallographic study of the whole extracellular regions of nectins.
Acta Cryst. F67:344-348.
Narita, H., Yamamoto, Y., Suzuki, M., Miyazaki, N., Yoshida, A., Kawai, K., Iwasaki, K.,Nakagawa, A., Takai, Y., and Sakisaka, T.:
Crystal structure of the cis-dimer of nectin-1: Implications for the architecture of cell-cell junctions.
The Journal of Biological Chemistry 286: 12659-12669.
Hagiwara, M., Maegawa, K., Suzuki, M., Ushioda, R., Araki, K., Matsumoto, Y., Hoseki, J., Nagata, K. and Inaba, K.:
Structural Basis of an ERAD Pathway Mediated by the ER-Resident Protein Disulfide Reductase ERdj5.
Molecular Cell 41：432-444.
Lee SJ, Jiko C, Yamashita E, Tsukihara T.:
Selective nuclear export mechanism of small RNAs.
Curr Opin Struct Biol.21: 101-108.
2010
Coban C, Igari Y, Yagi M, Reimer T, Koyama S, Aoshi T, Ohata K, Tsukui T, Takeshita F, Sakurai K, Takeshita F, Sakurai K, Ikegami T, Nakagawa A, Horii T, Nuñez G, Ishii KJ, Akira S.:
Immunogenicity of whole-parasite vaccines against Plasmodium falciparum involves malarial hemozoin and host TLR9.
Cell Host Microbe 7:50-61.
Fujiwara K, Maita N, Hosaka H, Okamura-Ikeda K, Nakagawa A, Taniguchi H:
Global conformational change associated with the two-step reaction catalyzed by Escherichia coli lipoate-protein ligase A.
J Biol Chem 285:9971-9980.
Higashiura A, Kurakane T, Matsuda M, Suzuki M, Inaka K, Sato M, Kobayashi T, Tanaka T, Tanaka H, Fujiwara K, Nakagawa A.:
High-resolution X-ray crystal structure of bovine H-protein at 0.88 A resolution.
Acta Crystallogr D Biol Crystallogr 66:698-708.
Miyazaki N, Wu B, Hagiwara K, Wang CY, Xing L, Hammar L, Higashiura A, Tsukihara T,Nakagawa A, Omura T, Cheng RH.:
The functional organization of the internal components of Rice dwarf virus.
J Biochem 147:843-850.
Ohta K, Muramoto K, Shinzawa-Itoh K, Yamashita E, Yoshikawa S, Tsukihara T:
X-ray structure of the NO-bound Cu(B) in bovine cytochrome c oxidase.
Acta Crystallogr Sect F Struct Biol Cryst Commun 66:251-253.
2009
Aoyama H, Muramoto K, Shinzawa-Itoh K, Hirata K, Yamashita E, Tsukihara T, Ogura T, Yoshikawa S:
A peroxide bridge between Fe and Cu ions in the O2 reduction site of fully oxidized cytochrome c oxidase could suppress the proton pump.
Proc Natl Acad Sci U S A 2009, 106:2165-2169.
Baniulis D, Yamashita E, Whitelegge JP, Zatsman AI, Hendrich MP, Hasan SS, Ryan CM, Cramer WA:
Structure-Function, Stability, and Chemical Modification of the Cyanobacterial Cytochrome b6f Complex from Nostoc sp. PCC 7120.
J Biol Chem 2009, 284:9861-9869.
Inaba K, Murakami S, Nakagawa A, Iida H, Kinjo M, Ito K, Suzuki M:
Dynamic nature of disulphide bond formation catalysts revealed by crystal structures of DsbB.
EMBO J 2009, 28:779-791.
Kodama Y, Masaki K, Kondo H, Suzuki M, Tsuda S, Nagura T, Shimba N, Suzuki E, Iefuji H:
Crystal structure and enhanced activity of a cutinase-like enzyme from Cryptococcus sp. strain S-2.
Proteins 2009, 77:710-717.
Maeda S, Nakagawa S, Suga M, Yamashita E, Oshima A, Fujiyoshi Y, Tsukihara T:
Structure of the connexin 26 gap junction channel at 3.5 A resolution.
Nature 2009, 458:597-602.
Mukai M, Ikegami K, Sugiura Y, Takeshita K, Nakagawa A, Setou M:
Recombinant mammalian tubulin polyglutamylase TTLL7 performs both initiation and elongation of polyglutamylation on beta-tubulin through a random sequential pathway.
Biochemistry 2009, 48:1084-1093.
Okada C, Yamashita E, Lee SJ, Shibata S, Katahira J, Nakagawa A, Yoneda Y, Tsukihara T:
A high-resolution structure of the pre-microRNA nuclear export machinery.
Science 2009, 326:1275-1279.
Suga M, Maeda S, Nakagawa S, Yamashita E, Tsukihara T:
A description of the structural determination procedures of a gap junction channel at 3.5 A resolution.
Acta Crystallogr D Biol Crystallogr 2009, 65:758-766.
Tanaka H, Kato K, Yamashita E, Sumizawa T, Zhou Y, Yao M, Iwasaki K, Yoshimura M, Tsukihara T:
The structure of rat liver vault at 3.5 angstrom resolution.
Science 2009, 323:384-388.
2008
Inaba K, Suzuki M, Maegawa K, Akiyama S, Ito K, Akiyama Y:
A pair of circularly permutated PDZ domains control RseP, the S2P family intramembrane protease of Escherichia coli.
J Biol Chem 2008, 283:35042-35052.
Ishii KJ, Koyama S, Nakagawa A, Coban C, Akira S:
Host innate immune receptors and beyond: making sense of microbial infections.
Cell Host Microbe 2008, 3:352-363.
Kato K, Tanaka H, Sumizawa T, Yoshimura M, Yamashita E, Iwasaki K, Tsukihara T:
A vault ribonucleoprotein particle exhibiting 39-fold dihedral symmetry.
Acta Crystallogr D Biol Crystallogr 2008, 64:525-531.
Miyazaki N, Uehara-Ichiki T, Xing L, Bergman L, Higashiura A, Nakagawa A, Omura T, Cheng RH:
Structural evolution of reoviridae revealed by oryzavirus in acquiring the second capsid shell.
J Virol 2008, 82:11344-11353.
Nakaishi A, Hirose M, Yoshimura M, Oneyama C, Saito K, Kuki N, Matsuda M, Honma N, Ohnishi H, Matozaki T, Okada M, Nakagawa A.:
Structural insight into the specific interaction between murine SHPS-1/SIRP alpha and its ligand CD47.
J Mol Biol 2008, 375:650-660.
Nishimiya Y, Kondo H, Takamichi M, Sugimoto H, Suzuki M, Miura A, Tsuda S:
Crystal structure and mutational analysis of Ca2+-independent type II antifreeze protein from longsnout poacher, Brachyopsis rostratus.
J Mol Biol 2008, 382:734-746.
Son SY, Ma J, Kondou Y, Yoshimura M, Yamashita E, Tsukihara T:
Structure of human monoamine oxidase A at 2.2-A resolution: the control of opening the entry for substrates/inhibitors.
Proc Natl Acad Sci U S A 2008, 105:5739-5744.
Wang CY, Miyazaki N, Yamashita T, Higashiura A, Nakagawa A, Li TC, Takeda N, Xing L, Hjalmarsson E, Friberg C, Liou DM, Sung YJ, Tsukihara T, Matsuura Y, Miyamura T, Cheng RH.:
Crystallization and preliminary X-ray diffraction analysis of recombinant hepatitis E virus-like particle.
Acta Crystallogr Sect F Struct Biol Cryst Commun 2008, 64:318-322.
2007
High-resolution crystal structure of beta2-microglobulin formed at pH 7.0
Kentaro Iwata, Takanori Matsuura, Kazumasa Sakurai, Atsushi Nakagawa, and Yuji Goto
Journal of Biochemistry, 142(3), 413-419 (2007)
Crystal Structure of Bovine Lipoyltransferase in Complex with Lipoly-AMP
Kazuko Fujiwara, Harumi Hosaka, Makoto Matsuda, Kazuko Okamura-Ikeda, Yurato Motokawa, Mamoru Suzuki, Atsushi Nakagawa and Hisaaki Taniguchi
Journal of Molecular Biology, 371(5), 222-234 (2007)
Crystal structure of mammalian a1,6-fucosyltransferase, FUT8
Hideyuki Ihara, Yoshitaka Ikeda, Sachiko Toma, Xiangchun Wang, Tadashi Suzuki, Jianguo Gu, Eiji Miyoshi, Tomitake Tsukihara, Koichi Honke, Akio Matsumoto, Atsushi Nakagawa, and Naoyuki Taniguchi
Glycobiology, 17, 455-466 (2007)
The Crystal Structure of a Virus-like Particle from the Hyperthermophilic ArchaeonPyrococcus furiosus Provides Insight into the Evolution of Viruses
Fusamichi Akita, Khoon Tee Chong, Hideaki Tanaka, Eiki Yamashita, Naoyuki Miyazaki, Yuichiro Nakaishi, Mamoru Suzuki, Kazunori Namba, Yasuko Ono, Tomitake Tsukihara, and Atsushi Nakagawa
Journal of Molecular Biology, 368(5), 1469-1483 (2007)
Structural Mechanism and Photoprotective Function of Water-soluble Chlorophyll-binding Protein
Daisuke Horigome, Hiroyuki Satoh, Nobue Itoh, Katsuyoshi Mitsunaga , Isao Oonishi, Atsushi Nakagawa, and Akira Uchida
Journal of Biological Chemistry, 282, 6525-6531 (2007)
Structural diversity in the cytoplasmic region of G protein-gated inward rectifier K+ channel
Atsushi Inanobe, Takanori Matsuura, Atsushi Nakagawa A, Yoshihisa Kurachi
Channels, 1(1), 39-45 (2007)
2006
Crystal structure of DsbB-DsbA complex reveals a mechanism of disulfide bond generation
Kenji Inaba, Satoshi Murakami, Mamoru Suzuki, Atsushi Nakagawa, Eiki Yamashita,Kengo Okada, and Koreaki Ito
Cell, 127, 789-801 (2006)
Conformation of Amyloid Fibrils of b2-Microglobulin Probed by Tryptophan Mutagenesis
Miho Kihara, Eri Chatani, Kentaro Iwata, Kaori Yamamoto, Takanori Matsuura, Atsushi Nakagawa, Hironobu Naiki, Yuji Goto
Journal of Biological Chemistry, 281(41), 31061-31069 (2006)
Orexin-A is composed of a highly conserved C-terminal and a specific, hydrophilic N-terminal region, revealing the structural basis of specific recognition by the orexin-1 receptor
Tomoyo Takai, Takao Takaya, Mutsuko Nakano, Hideo Akutsu, Atsushi Nakagawa,, Saburo Aimoto, Katsuya Nagai, Takahisa Ikegami
Journal of Peptide Science, 12(7), 443-454 (2006)
Targeting AMAP1 and cortactin binding bearing an atypical SH3/proline interface for prevention of breast cancer invasion and metastasis
Hashimoto, S., Hirose, M., Hashimoto, A., Morishige, M., Yamada, A., Hosaka, H., Akagi, K., Ogawa, E., Oneyama, C., Agatsuma, T., Okada, M., Kobayashi, H., Wada, H., Nakano, H., Ikegami, T., Nakagawa, A., and Sabe, H.
Proceedings of the National Academy of Science USA, 103, 7036-7041 (2006)
Crystallization and preliminary X-ray analysis of rat SHPS-1
Aki Nagata, Hiroshi Ohnishi, Masato Yoshimura, Akira Ogawa, Sayuri Ujita, Hiroaki Adachi, Masato Okada, Takashi Matozaki, and Atsushi Nakagawa
Acta Crystallographica sect. F, 62, 189-191 (2006)
2005
Crystallization and preliminary X-ray diffraction analysis of a chitin-binding domain of hyperthermophilic chitinase from Pyrococcus furiosus
Tsutomu Nakamura, Kazuhiko Ishikawa, Yoshihisa Hagihara, Takashi Oku, Atsushi Nakagawa, Tsuyoshi Inoue, Mitsuo Ataka, and Koichi Uegaki
Acta Crystallographica sect. F, 61, 476-478 (2005)
Crystallization and preliminary X-ray analysis of hyperthermophilic L-threonine dehydrogenase from the archaeon Pyrococcus furiosus
Noriko Higashi, Takanori Matsuura, Atsushi Nakagawa, and Kazuhiko Ishikawa
Acta Crystallographica sect. F, 61, 432-434 (2005)
Crystal structure of lipoate-protein ligase A from Escherichia coli: Determination of the lipoic acid-binding site
Kazuko Fujiwara, Sachiko Toma, Kazuko Okamura-Ikeda,Yutaro Motokawa, Atsushi Nakagawa, and Hisaaki Taniguchi
Journal of Biological Chemistry, 280, 33645-33651 (2005)
Crystal structure of human T-protein of glycine cleavage system at 2.0Å resolution and its implication for understanding non-ketotic hyperglycinemia.
Okamura-Ikeda K., Hosaka H., Yoshimura M., Yamashita E., Toma S., Nakagawa A., Fujiwara K., Motokawa Y., and Taniguchi H.
Journal of Molecular Biology, 351(5), 1146-1159 (2005)
Using cryoloops for X-ray data collection from protein crystals at room temperature: A simple applicable method
Shu Jie Li, Mamoru Suzuki, Atsushi Nakagawa
Journal of Crystal Growth, 281, 592-595 (2005)
Ab initio crystal structure determination of spherical viruses that exhibit a centrosymmetric location in the unit cell
Taka, J., Naitow, H., Yoshimura, M., Miyazaki, N., Nakagawa, A. and T. Tsukihara
Acta Crystallographica sect. D, 61, 1099-1106 (2005)
Expression and molecular characterization of spherical particles derived from the genome of the hyperthermophilic euryarchaeote,Pyrococcus furiosus
Kazunori Namba, Kyoji Hagiwara, Hideaki Tanaka, Yuichiro Nakaishi, Khoon Tee Chong, Eiki Yamashita, George Enyimah Armah, Yasuko Ono, Yoshizumi Ishino, Toshihiro Omura, Tomitake Tsukihara, and Atsushi Nakagawa
Journal of Biochemistry, 138(2), 193-199 (2005)
A solubility and B-factor minimum of hen egg-white lysozyme crystals at 0.5 M concentration NiCl2
Shu Jie Li, Takanori Matsuura, Hideaki Tanaka, Atsushi Nakagawa, Tomitake Tsukihara, and Mitsuo Ataka
Journal of Crystal Growth, 276, 222-229 (2005)
The crystal structures of semi-synthetic aequorins
Sachiko Toma, Khoon Tee Chong, Atsushi Nakagawa, Katsunori Teranishi, Satoshi Inouye, and Osamu Shimomura
Protein Science, 14, 409-416 (2005)
Transcapsidation and the conserved interactions of two major structural proteins of a pair of phytoreoviruses confirm the mechanism of assembly of the outer capsid layer
Naoyuki Miyazaki, Kyoji Hagiwara, Hisashi Naitow, Takahiko Higashi, R. Holland Cheng, Tomitake Tsukihara, Atsushi Nakagawa, and Toshihiro Omura
Journal of Molecular Biology, 345, 229-237 (2005)
2004
The three-dimensional structure of aspergilloglutamic peptidase from Aspergillus niger
Hiroshi Sasaki, Atsushi Nakagawa, Tomonari Muramatsu, Megumi Suganuma, Yoriko Sawano, Masaki Kojima, Keiko Kubota, Kenji Takahashi, and Masaru Tanokura
Proceedings of the Japan Academy, 80(B), 435-438 (2004)
Crystal structure of the drug-discharge outer membrane protein, OprM, of Pseudomonas aeruginosa: Dual modes of membrane anchoring and occluded cavity end
Hiyroyuki Akama, Misa Kanemaki, Masato Yoshimura, Tomitake Tsukihara, Tomoe Kashiwagi, Hiroshi Yoneyama, Shin-ichiro Narita, Atsushi Nakagawa, and Taiji Nakae
Journal of Biological Chemistry,279, 52816-52819 (2004)
Ni2+ binds to active site of hen egg-white lysozyme and quenches fluorescence of Trp62 and Trp108
Shu Jie Li, Atsushi Nakagawa, and Tomitake Tsukihara
Biochemical and Biophysical Research Communications, 324, 529-533 (2004)
Structure of human erythrocyte NADH-cytochrome b5 reductase
Sachiko Bando, Tsunehiro Takano, Toshitsugu Yubisui, Komei Shirabe, Masazumi Takeshita, and Atsushi Nakagawa
Acta Crystallographica sect. D, 60, 1929-1934 (2004)
Crystal Structure of the Hemolytic Lectin CEL-III Isolated from the Marine InvertebrateCucumaria echinata
Tatsuya Uchida, Takeyuki Yamazaki, Seiichiro Eto, Hajime Sugawara, Genji Kurisu, Atsushi Nakagawa, Masami Kusunoki, and Tomomitsu Hatakeyama
Journal of Biological Chemistry, 279, 37133-37141 (2004)
Crystal Structure of the Membrane Fusion Protein, MexA, of the Multidrug Transporter inPseudomonas aeruginosa
Hiroyuki Akama, Takanori Matsuura, Sachiko Kashiwagi, Hiroshi Yoneyama, Shin-ichiro Narita, Tomitake Tsukihara, Atsushi Nakagawa, and Taiji Nakae
Journal of Biological Chemistry, 279, 25939-25942 (2004)
Structure of rat monoamine oxidase A and its specific recognitions for substrates and inhibitors
Jichun Ma, Masato Yoshimura, Eiki Yamashita , Atsushi Nakagawa , Akio Ito, and Tomitake Tsukihara
Journal of Molecular Biology, 338, 103-114 (2004)
The Amino-Terminal Region of Major Capsid Protein P3 Is Essential for Self-Assembly of Single-Shelles Core-Like Particles of Rice Dwarf Virus
Kyoji Hagiwara, Takahiko Higashi, Naoyuki Miyazaki, Hisashi Naitow, R. Holland Cheng, Atsushi Nakagawa, Hiroshi Mizuno, Tomitake Tsukihara, and Toshihiro Omura
Journal of Virology, 78, 3145-3148 (2004)
2003
The Structure of Importin-b Bound to SREBP-2: Nuclear Import of a Transcription Factor
Soo Jae Lee, Toshihiro Sekimoto, Eiki Yamashita, Emi Nagoshi,Atsushi Nakagawa, Naoko Imamoto, Masato Yoshimura, Hiroaki Sakai, Khoon Tee Chong, Tomitake Tsukihara, and Yoshihiro Yoneda
Science, 302, 1571-1575 (2003)
Crystallization and preliminary crystallographic analysis of importin-b-SREBP-2 complex
Soo Jae Lee, Toshihiro Sekimoto, Eiki Yamashita, Emi Nagoshi, Atsushi Nakagawa, Hideaki Tanaka, Yoshihiro Yoneda, and Tomitake Tsukihara
Acta Crystallographica sect. D, 59, 1866-1868 (2003)
The Atomic Structure of Rice dwarf Virus reveals the Self-Assembly Mechanism of Component Proteins
Atsushi Nakagawa, Naoyuki Miyazaki, Junichiro Taka, Hisashi Naitow, Akira Ogawa, Zui Fujimoto, Hiroshi Mizuno, Takahiko Higashi, Yasuo Watanabe, Toshihiro Omura, R. Holland Cheng, and Tomitake Tsukihara
Structure, 11, 1227-1238 (2003)
2002
Structure of the Carboxyl-terminal Src Kinase, Csk
Akira Ogawa, Yoshiharu Takayama, Hiroaki Sakai, Khoon Tee Chong, Satoru Takeuchi, Atsushi Nakagawa, Shigeyuki Nada, Masato Okada, and Tomitake Tsukihara
The Journal of Biological Chemistry, 277, 14351-14354 (2002)
2001
Entropic Stabilization of the Tryptophan Synthase a-Subunit from a Hyperthermophile,Pyrococcus furiosus: X-ray Analysis and Calorimetry
Yuriko Yamagata, Kyoko Ogasahara, Yusaku Hioki, Soo Jae Lee, Atsushi Nakagawa, Haruki Nakamura, Masami Ishida, Seiki, Kuramitsu, and Katsuhide Yutani
Journal of Biological Chemistry, 276, 11062-11071 (2001)
2000
Crystal Structure of 1-Aminocyclopropane-1-carboxylate Deaminase from Hansenula saturnus
Min Yao, Toyoyuki Ose, Hiroshi Sugimoto, Atsushi Horiuchi, Atsushi Nakagawa, Soichi Wakatsuki, Daisuke Yokoi, Toyotaka Murakami, Mamoru Honma, and Isao Tanaka
Journal of Biological Chemistry, 275, 34557-34565 (2000)
The Adoption of a Twisted Structure of Importin-b Is Essential for the Protein-protein Interaction Required for Nuclear Transport
Soo Jae Lee, Naoko Imamoto, Hiroaki Sakai, Atsushi Nakagawa, Shingo Kose, Makiko Koike, Masaki Yamamoto, Takashi Kumasaka, Yoshihiro Yoneda, and Tomitake Tsukihara
Journal of Molecular Biology, 302, 251-264 (2000)
The Structure of Human MRP8, A Member of the S100 Calcium-binding Protein Family, by MAD Phasing at 1.9 Å Resolution
Kohtaro Ishikawa, Atsushi Nakagawa, Isao Tanaka, Masaki Suzuki, and Jun Nishihira
Acta Crystallographica sect. D, 56, 559-566 (2000)
Structure and Thermodynamics of the Extraordinarily Stable Molten Globule State of Canine Milk Lysozyme
Takumi Koshiba, Min Yao, Yoshihiro Kobashigawa, Makoto Demura, Atsushi Nakagawa, Isao Tanaka, Kunihiro Kuwajima, and Katsutoshi Nitta
Journal of Biochemistry, 39, 3248-3257 (2000)
1999
Magnesium(II) and Zinc(II)-Protoporphyrin IX’s Stabilize the Lowest Oxygen Affinity State of Human Hemoglobin Even More Strongly than Deoxyheme
Gentaro Miyazaki, Hideki Morimoto, Kyung-Mook Yun, Sam-Yong Park, Atsushi Nakagawa, Hirotaka Minagawa, and Naoya Shibayama
Journal of Molecular Biology, 292, 1121-1136 (1999)
Crystal Structure of a Ribonuclease from the Seeds of Bitter Gourd (Momordica charantia) at 1.75 Å Resolution
Atsushi Nakagawa, Isao Tanaka, Ritsu Sakai, Takashi Nakashima, Gunki Funatsu, and Makoto Kimura
Biochimica et Biophysica Acta, 1433, 253-260 (1999)
The Three-Dimensional Structure of the RNA-Binding Domain of Ribosomal Protein L2; A Protein at the Peptidyl Transferase Center of the Ribosome
Atsushi Nakagawa, Takashi Nakashima, Masae Taniguchi, Harumi Hosaka, Makoto Kimura, and Isao Tanaka
EMBO Journal, 18, 1459-1467 (1999)
High-Resolution Crystals of the HU Mutant K38N from Bacillus stearothermophilus
Takahiro Tominaga, Atsushi Nakagawa, Isao Tanaka, Shunsuke Kawamura, and Makoto Kimura
Journal of Structural Biology, 125, 86-89 (1999)
Crystal Structure of Human D-Dopachrome Tautomerase, a Homologue of Macrophage Migration Inhibitory Factor, at 1.54 A° Resolution
Hiroshi Sugimoto, Masae Taniguchi, Atsushi Nakagawa, Isao Tanaka, Masaki Suzuki, and Jun Nishihira
Biochemistry, 38, 3268-3279 (1999)
1998
Crystallization and Preliminary X-Ray Crystallographic Study of a 23S rRNA Binding Domain of the Ribosomal Protein L2 from Bacillus stearothermophilus
Takashi Nakashima, Makoto Kimura, Atsushi Nakagawa, and Isao Tanaka
Journal of Structural Biology, 124, 99-101 (1998)
Matching the Crystallographic Structure of Ribosomal Protein S7 to a Three-Dimensional Model of the 16S Ribosomal RNA
Isao Tanaka, Atsushi Nakagawa, Harumi Hosaka, Soichi Wakatsuki, Florian Mueller, and Richard Brimacombe
RNA, 4, 542-550 (1998)
Molecular Cloning of Human D-Dopachrome Tautomerase cDNA: N-terminal Proline Is Essential for Enzyme Activation
Jun Nishihira, Mami Fujinaga, Takeshi Kuriyama, Masaki Suzuki, Hiroshi Sugimoto, Atsushi Nakagawa, Isao Tanaka, and Masaharu Sakai
Biochemical and Biophysical Research Communications, 243, 538-544 (1998)
1997
Crystallization and Preliminary X-Ray Studies of Two Serine Proteinase Inhibitors, BGIA and BGIT, from the Seeds of Bitter Gourd
Hidemasa Kondo, Jin Nakanose, Atsushi Nakagawa, Isao Tanaka, Makoto Kimura, and Gunki Funatsu
Journal of Structural Biology, 120, 204-206 (1997)
Crystallization and Preliminary X-Ray Crystallographic Study of the Ribosomal Protein S7 from Bacillus stearothermophilus
Nao Harada, Kazunari Sano, Makoto Kimura, Harumi Hosaka, Atsushi Nakagawa, and Isao Tanaka
Journal of Structural Biology, 120, 112-114 (1997)
Crystallization and Preliminary X-ray Analysis of Human D-Dopachrome Tauromerase
Hiroshi Sugimoto, Masae Taniguchi, Atsushi Nakagawa, Isao Tanaka, Masaki Suzuki, and Jun Nishihira
Journal of Structural Biology, 120, 105-108 (1997)
Crystal Structure of Nitric Oxide Reductase from Denitrifying Fungus Fusarium oxysporum
Sam-Yong Park, Hideaki Shimizu, Shin-ichi Adachi, Atsushi Nakagawa, Isao Tanaka, Kazuhiko Nakahara, Hirofumi Shoun, Eiji Obayashi, Hiro Nakamura, Tetsutaro Iizuka, and Yoshitsugu Shiro
Nature Structural Biology, 4, 827-832 (1997)
Ribosomal Protein S7: A New RNA-Binding Motif with Structural Similarities to a DNA Architectural Factor
Harumi Hosaka, Atsushi Nakagawa, Isao Tanaka, Nao Harada, Kazunari Sano,Makoto Kimura, Min Yao, and Soichi Wakatsuki
Structure, 5, 1199-1208 (1997)
Crystallization, Preliminary Diffraction and Electron Paramagnetic Resonance Studies of A Single Crystal of Cytochrome P450nor
Sam-Yong Park, Hideaki Shimizu, Shin-ichi Adachi, Yoshitsugu Shiro, Tetsuro Iizuka, Atsushi Nakagawa, Isao Tanaka, Hirofumi Shoun, and Hiroshi Hori
FEBS Letters, 412, 346-350 (1997)
Escherichia coli Positive Regulator OmpR Has a Large Loop Structure at the Putative RNA Polymerase Interaction Site
Hidemasa Kondo, Atsushi Nakagawa, Jun Nishihira, Yoshifumi Nishimura, Takeshi Mizuno, and Isao Tanaka
Nature Structural Biology, 4, 28-31 (1997)
1996
Crystal Structure of Macrophage Migration Inhibitory Factor from Human Lymphocyte at 2.1Å Resolution
Hiroshi Sugimoto, Mamoru Suzuki, Atsushi Nakagawa, Isao Tanaka, and Jun Nishihira
FEBS Letters, 389, 145-148 (1996)
How Coenzyme B12 Radicals Are Generated: The Crystal Structure of Methylmalonyl-coenzyme A Mutase at 2 Å Resolutions
Filippo Mancia, Nicholas H. Keep, Atsushi Nakagawa, Peter F. Leadlay, Sean McSweeney, Bjarne Rasmussen, Peter Bo¨secke, Olivier Diat, and Philip R. Evans
Structure, 4, 339-350 (1996)
Crystal Structure of The Macrophage Migration Inhibitory Factor from Rat Liver
Mamoru Suzuki, Hiroshi Sugimoto, Atsushi Nakagawa, Isao Tanaka, Jun Nishihira, and Masaharu Sakai
Nature Structural Bioogy, 3, 259-266 (1996)
High-resolution Crystal Structure of Magnesium(MgII)-Iron(FeII) Hybrid Hemoglobin with Liganded Beta Subunits
Sam-Yong Park, Atsushi Nakagawa, and Hideki Morimoto
Journal of Molecular Biology,255, 726-734 (1996)
1995
Crystallization of Rat Liver Macrophage Migration Inhibitory Factor (MIF) for MAD Analysis
Hiroshi Sugimoto, Mamoru Suzuki, Atsushi Nakagawa, Isao Tanaka, Mami Fujinaga, and Jun Nishihira
Journal of Structural Biology, 115, 331-334 (1995)
Weissenberg Camera for Macromolecules with Imaging Plate Data Collection System at The Photon Factory: Present Status and Future Plan
Noriyoshi Sakabe, Shinji Ikemizu, Kiwako Sakabe, Tsuneyuki Higashi, Atsushi Nakagawa, Nobuhisa Watanabe, Shin-ichi Adachi, and Kyoyu Sasaki
Reviews in Scientific Instruments, 66 (2), 1276-1281 (1995)
XVIEWER – An Interactive Image Processing of Diffraction Data from the Weissenberg Camera for Macromolecular Crystallography
1994
Isao Fujii, Noriaki Hirayama, Yukio Morimoto, Atsushi Nakagawa, Yoshiki Higuchi, and Noritake Yasuoka
Bioimages, 2, 47-52 (1994)
Flavocommelin Octaacetate
Yuji Ohsawa, Shigeru Ohba, Seiji Kosemura, Shosuke Yamamura, Atsushi Nakagawa, Kumi Yohida, Tadao Kondo
Acta Crystallographica sect.C, 50, 645-648 (1994)
1992
Structural Studies of Proteins from Sulfate-Reducing Bacteria
Noritake Yasuoka, Yoshiki Higuchi, Yukio Morimoto, Atsushi Nakagawa, Hiroo Inokuchi, and Tatsuhiko Yagi
Proceedings of The Second R.O.C.-Japan Joint seminar On Crystallography, pp.203-212 (1992)
The Weissenberg Method for the Collection of X-ray Diffraction from Macromolecular Crystals: Modification to the Data-Processing Program WEIS
Barry A. Fields, J. Mitchell Guss, Michael C. Lawrence, and Atsushi Nakagawa
Journal of Applied Crystallography, 25, 809-811 (1992)
Structural Basis of Blue-Colour Development in Flower Petals from Commelina communis
Tadao Kondo, Kumi Yoshida, Atsushi Nakagawa, Takatoshi Kawai, Hirotoshi Tamura, and Toshio Goto
Nature, 358, 515 – 518 (1992)
Crystallization and Preliminary X-ray Investigation of Proteinase A, a Non-Pepsin-Type Acid Protease from Aspergillus niger var. macrosporus
Masaru Tanokura, Hidemi Matsuzaki, So Iwata, Atsushi Nakagawa, Toru Hamaya, Toshio Takizawa, and Kenji Takahashi
Journal of Molecular Biology, 223, 373 – 375 (1992)
1990
S-Class Cytochromes c Have A Variety of Folding Patterns : Structure of Cytochrome c‐553 from D. vulgaris Determined By The Multi-wavelength Anomalous Dispersion Method
Atsushi Nakagawa, Yoshiki Higuchi, Noritake Yasuoka, Yukiteru Katsube, and Tatsuhiko Yagi
Journal of Biochemistry (Tokyo), 108, 701-703 (1990)
1989
New Multipole Wiggler/Undulator Beamline (BL-16) at the Photon Factory
Tadashi Matsushita, Hideki Maezawa, Tetsuya Ishikawa, Masaharu Nomura, Atsushi Nakagawa, Akira Mikuni, Yasuji Muramatsu, Yoshinori Satow, Takashi Kosuge, Shigeru Sato, T.Koide, Norikazu Kanaya, Seiji Asaoka, and Ichiro Nagakura
Reviews in Scientific Instruments, 60(7), 1874-1876 (1989)
1988
Design and Performance of an Imaging Plate System for X-ray Diffraction Study
Yoshiyuki Amemiya, Tadashi Matsushita, Atsushi Nakagawa, Yoshinori Satow, Junji Miyahara, and Jun-ichi Chikawa
Nuclear Instruments and Methods in Physics Research, A266, 645-653 (1988)
1986
Crystallographic Study of Cytochrome c553 from Desulfovibrio vulgaris Miyazaki
Atsushi Nakagawa, Etsuro Nagashima, Yoshiki Higuchi, Masami Kusunoki, Yoshiki Matsuura, Noritake Yasuoka, Yukiteru Katsube, Hideaki Chihara, and Tatsuhiko Yagi
Journal of Biochemistry (Tokyo), 99, 605-606 (1986)