Selected Papers
2016
Anna MUNKE, Jakob ANDREASSON, Andrew AQUILA, Salah AWEL, Kartik AYYER, Anton BARTY, Richard J. BEAN, Peter BERNTSEN, Johan BIELECKI, Sébastien BOUTET, Maximilian BUCHER, Henry N. CHAPMAN, Benedikt J. DAURER, Hasan DEMIRCI, Veit ELSER, Petra FROMME, Janos HAJDU, Max F. HANTKE, Akifumi HIGASHIURA, Brenda G. HOGUE, Ahmad HOSSEINIZADEH, Yoonhee KIM, Richard A. KIRIAN, Hemanth K.N. REDDY, Ti-Yen LAN, Daniel S.D. LARSSON, Haiguang LIU, N. Duane LOH, Filipe R.N.C. MAIA, Adrian P. MANCUSO, Kerstin MÜHLIG, Atsushi NAKAGAWA, Daewoong NAM, Garrett NELSON, Carl NETTELBLAD, Kenta OKAMOTO, Abbas OURMAZD, Max ROSE, Gijs van der SCHOT, Peter SCHWANDER, M. Marvin SEIBERT, Jonas A. SELLBERG, Raymond G. SIERRA, Changyong SONG, Martin SVENDA, Nicusor TIMNEANU, Ivan A. VARTANYANTS, Daniel WESTPHAL, Max O. WIEDORN, Garth J. WILLIAMS, Paulraj Lourdu XAVIER, Chun Hong YOON & James ZOOK
Coherent diffraction of single Rice Dwarf virus particles using hard X-rays at the Linac Coherent Light Source
Scientific Data, 3, 160064 (2016)
Akifumi HIGASHIURA, Eiki YAMASHITA, Masato YOSHIMURA, Kazuya HASEGAWA, Yukito FURUKAWA, Takashi, KUMASAKA, Go UENO, Masaki YAMAMOTO, Tomitake TSUKIHARA & Atsushi NAKAGAWA
SPring-8 BL44XU, beamline designed for structure analysis of large biological macromolecular assemblies
AIP Conference Proceedings, 1741 , 030028 (2016)
Masato YOSHIMURA, Nai-Chi CHEN, Hong-Hsiang GUAN, Phimonphan CHUANKHAYAN, Chien-Chih LIN, Atsushi NAKAGAWA & Chun-Jung CHEN
Ab initio phasing by molecular averaging in real space with new criteria: an application to structure determinations of a betanodavirus Acta Crystallographica Section D: Biological Crystallography, 72, 830-840 (2016)
Yuichiro FUJIWARA, Hiroko X. KONDO, Matsuyuki SHIROTA, Megumi KOBAYASHI, Kohei TAKESHITA, Atsushi NAKAGAWA, Yasushi OKAMURA & Kengo KINOSHITA
Structural basis for the membrane association of ankyrinG via palmitoylation
Scientific Reports, 6, 23981 (2016)
Kohji YAMAMOTO, Akifumi HIGASHIURA, Mamoru SUZUKI, Takahiro SIOTSUKA, Ryohei SUGAHARA, Takeshi FUJII & Atsushi NAKAGAWA
Structural characterization of an aldo-keto reductase (AKR2E5) from the silkworm Bombyx mori
Biochemical and Biophysical Research Communications, 474(1), 104-110 (2016)
Paul D. ADAMS, Kathleen AERTGEERTS, Cary BAUER, Jeffrey A. BELL, Helen M. BERMAN, Talapady N. BHAT, Jeff M. BLANEY, Evan BOLTON, Gerard BRICOGNE, David BROWN, Stephen K. BURLEY, David A. CASE, Kirk L. CLARK, Tom DARDEN, Paul EMSLEY, Victoria A. FEHER, Zukang FENG, Colin R. GROOM, Seth F. HARRIS, Jorg HENDLE, Thomas HOLDER, Andrzej JOACHIMIAK, Gerard J. KLEYWEGT, Tobias KROJER, Joseph MARCOTRIGIANO, Alan E. MARK, John L. MARKLEY, Matthew MILLER, Wladek MINOR, Gaetano T. MONTELIONE, Garib MURSHUDOV, Atsushi NAKAGAWA, Haruki NAKAMURA, Anthony NICHOLLS, Marc NICKLAUS, Robert T. NOLTE, Anil K. PADYANA, Catherine E. PEISHOFF, Susan PIENIAZEK, Randy J. READ, Chenghua SHAO, Steven SHERIFF, Oliver SMART, Stephen SOISSON, John SPURLINO, Terry STOUCH, Radka SVOBODOVA, Wolfram TEMPEL, Thomas C. TERWILLIGER, Dale TRONRUD, Sameer VELANKAR, Suzanna C. WARD, Gregory L, WARREN, John D. WESTBROOK, Pamela WILLIAMS, Huanwang YANG & Jasmine YOUNG
Outcome of the First wwPDB/CCDC/D3R Ligand Validation Workshop
Structure, 24(4), 502-508 (2016)
Ryo YONEHARA, Eiki YAMASHITA, Atsushi NAKAGAWA
Crystal structures of OprN and OprJ, outer membrane factors of multidrug tripartite efflux pumps of Pseudomonas aeruginosa
Proteins: Structure, Function, and Bioinformatics, 84(6), 759-769 (2016)
Hiroki ARIMA, Hidekazu TSUTSUI, Kohei TAKESHITA, Atsushi NAKAGAWA, Ayako SAKAMOTO, Manabu YOSHIDA & Yasushi OKAMURA
CatSper has a Calcium-Permeable Voltage Sensor Domain
Biophysical Journal, 10(3), 114a-115a (2016)
Naoyuki MIYAZAKI, Akifumi HIGASHIURA, Tomoko HIGASHIURA, Fusamichi AKITA, Hiroyuki HIBINO, Toshihiro OMURA, Atsushi NAKAGAWA & Kenji IWASAKI
Electron microscopic imaging revealed the flexible filamentous structure of the cell attachment protein P2 of Rice dwarf virus located around the icosahedral 5-fold axes
Journal of Biochemistry, 159(2), 181-190 (2016)
Widhi Dyah SAWITRI, Hirotaka NARITA, Etsuko ISHIZAKA-IKEDA, Bambang SUGIHARTO, Toshiharu HASE, and Atsushi NAKAGAWA
Purification and characterization of recombinant sugarcane sucrose phosphate synthase expressed in E. coli and insect Sf9 cells: an importance of the N-terminal domain for an allosteric regulatory property
Journal of Biochemistry, 159(6), 599-607 (2016)
2015
Kenta TERUYA, Yasunao HATTORI, Yasuhiro SHIMAMOTO, Kazuya KOBAYASHI, Akira SANJOH, Atsushi NAKAGAWA, Eiki YAMASHITA & Kenichi AKAJI
Structural basis for the development of SARS 3CL protease inhibitors from a peptide mimic to an aza-decaline scaffold
Biopolymer: Peptide Science, 106(4), 391-403 (2015)
Naomine YANO, Kazumasa MURAMOTO, Masao MOCHIZUKI, Kyoko SHINZAWA-ITOH, Eiki YAMASHITA, Shinya YOSHIKAWA & Tomitake TSUKIHARA
X-ray structure of cyanide-bound bovine heart cytochrome c oxidase in the fully oxidized state at 2.0 angstrom resolution
Acta Crystallographica Section F: Structural Biology Communications, 71(6), 726-730 (2015)
Tomoko ISHIHARA, Kentaro IFUKU, Eiki YAMASHITA, Yuko FUKUNAGA, Yuri NISHINO, Atsuo MIYAZAWA, Yasuhiro KASHINO & Natsuko INOUE-KASHINO
Utilization of light by fucoxanthin-chlorophyll-binding protein in a marine centric diatom, Chaetoceros gracilis
Photosynthesis Research, 126(2-3), 437-447 (2015)
C.-C. LIN, Phimonphan CHUANKHAYAN, W.-N. CHANG, T.-T. KAO, H.-H. GUAN, H.-K. FUN, Atsushi NAKAAGWA, T.-F .FU & C.-J. CHEN
Structures of the hydrolase domain of zebrafish 10-formyltetrahydrofolate dehydrogenase and its complexes reveal a complete set of key residues for hydrolysis and product inhibition
Acta Crystallographica Section D: Biological Crystallography, 71(4), 1006-1021 (2015)
Kohji YAMAMOTO, Akifumi HIGASHIURA, M.D. Tofazzal HOSSAIN, Naotaka YAMADA, Takahiro SHIOTSUKI & Atsushi NAKAGAWA
Structural characterization of the catalytic site of a Nilaparvata lugens delta-class glutathione transferase
Archives of Biochemistry and Biophysics, 566, 36-42 (2015)
T. NAKANE, C. SONG, M. SUZUKI, E. NANGO, J. KOBAYASHI, T. MASUDA, S. INOUE, E. MIZOHATA, T. NAKATSU, T. TANAKA, R. TANAKA, T. SHIMAMURA, K. TONO, Y. JOTI, T. KAMESHIMA, T. HATSUI, M. YABASHI, O. NUREKI, S. IWATA & M. SUGAHARA
Native sulfur/chlorine SAD phasing for serial femtosecond crystallography
Acta Crystallogrographica section D Biological Crystallography, 71(12), 2519-2525 (2015)
Jinsue SONG, Shingo KOSE, Ai WATANABE, Se-Young SON, Saehae CHOI, Hyerim HONG, Eiki YAMASHITA, Il Yeong PARK, Naoko IMAMOTO & Soo Jae LEE
Structural and functional analysis of Hikeshi, a new nuclear transport receptor of Hsp70s
Acta Crystallogrographica section D Biological Crystallography, 71(3), 473-483 (2015)
Jinsue SONG, Hye Rim HONG, Eiki YAMASHITA, Il Yeong PARK & Soo Jae LEE
Low pH-driven folding of WW45-SARAH domain leads to stabilization of the WW45-Mst2 complex
Journal of Biochemistry, 158(3), 181-188 (2015)
Michihiro SUGAHARA, Eiichi MIZOHATA, Eriko NANGO, Mamoru SUZUKI, Tomoyuki TANAKA, Tetsuya MASUDA, Rie TANAKA, Tatsuro SHIMAMURA, Yoshiki TANAKA, Chiyo SUNO, Kentaro IHARA, Dongqing PAN, Keisuke KAKINOUCHI, Shigeru SUGIYAMA, Michio MURATA, Tsuyoshi INOUE, Kensuke TONO, Changyong SONG, Jaehyun PARK, Takashi KAMESHIMA, Takaki HATSUI, Yasumasa JOTI, Makina YABASHI & So IWATA
Grease matrix as a versatile carrier of proteins for serial crystallography
Nature Methods,12, 61-63(2015)
Yasuhiro SHIMAMOTO, Yasunao HATTORI, Kazuya KOBAYASHI, Kenta TERUYA, Akira SANJOH, Atsushi NAKAGAWA, Eiki YAMASHITA & Kenichi AKAJI
Fused-ring structure of decahydroisoquinolin as a novel scaffold for SARS 3CL protease inhibitors
Bioorganic & Medicinal Chemistry, 23(4), 876-890 (2015)
Yasunao HATTORI, Kazuya KOBAYASHI, Ayaka DEGUCHI, Yukie NOHARA, Tomomi AKIYAMA, Kenta TERUYA, Akira SANJOH, Atsushi NAKAGAWA, Eiki YAMASHITA & Kenichi AKAJI
Evaluation of transition-state mimics in a superior BACE1 cleavage sequence as peptide-mimetic BACE1 inhibitors
Bioorganic & Medicinal Chemistry, 23(17), 5626-5640 (2015)
Naoyuki MIYAZAKI, Akifumi HIGASHIURA, Tomoko HIGASHIURA, Fusamichi AKITA, Hiroyuki HIBINO, Toshihiro OMURA, Atsushi NAKAGAWA & Kenji IWASAKI
Electron microscopic imaging revealed the flexible filamentous structure of the cell attachment protein P2 of Rice dwarf virus located around the icosahedral 5-fold axes
Journal of Biochemistry, 159(2), 181-190 (2015)
Hiroko KOBAYASHI, Naomi MOTOYOSHI,Tadashi ITAGAKI, Mamoru SUZUKI & Norio INOKUCHI
Effect of the replacement of aspartic acid/glutamic acid residues with asparagine/glutamine residues in RNase He1 from Hericium erinaceus on inhibition of human leukemia cell line proliferation
Bioscience Biotechnology and Biochemistry, 79, 211-217(2015)
Kensuke TONO, Eriko NANGO, Michihiro SUGAHARA, Changyong SONG, Jaehyun PARK, Tomoyuki TANAKA, Rie TANAKA, Yasumasa JOTI, Takashi KAMESHIMA, Shun ONO, Takaki HATSUI, Eiichi MIZOHATA, Mamoru SUZUKI, Tatsuro SHIMAMURA, Yoshiki TANAKA, So IWATA & Makina YAMASHI
Diverse application platform for hard X-ray diffraction in SACLA (DAPHNIS): application to serial protein crystallography using an X-ray free-electron laser
Journal of Synchrotron Radiation, 22(3), 532-537 (2015)
Nai-Chi CHEN, Masato YOSHIMURA, Hong-Hsiang GUAN, Ting-Yu WANG, Yuko MISUMI, Chien-Chih LIN, Phimonphan CHUANKHAYAN, Atsushi NAKAGAWA, Sunney I. CHAN, Tomitake TSUKIHARA, Tzong-Yueh CHEN & Chun-Jung CHEN
Crystal Structures of a Piscine Betanodavirus: Mechanisms of Capsid Assembly and Viral Infection
PLOS Pathogens, 11(10), e1005203 (2015)
Yoshie FUJIWARA, Natsuko GODA, Tomonari TAMASHIRO, Hirotaka NARITA, Kaori SATOMURA, Takeshi TENNO, Atsushi NAKAGAWA, Masayuki ODA, Mamoru SUZUKI, Toshiaki SAKISAKA, Yoshimi TAKAI, Hidekazu HIROAKI
Crystal structure of afadin PDZ domain-nectin-3 complex shows the structural plasticity of the ligand-binding site
Protein Science, 24(3), 376-385 (2015)
Jun ABE, Takuya B. HIYAMA, Atsushi MUKAIYAMA, Seyoung SON, Toshifumi MORI, Shinji SAITO, Masato OSAKO, Julie WOLANIN, Eiki YAMASHITA, Takao KONDO, Shuji AKIYAMA
Atomic-scale origins of slowness in the cyanobacterial circadian clock
Science, 349(6245), 312-316 (2015)
Keitaro YAMASHITA, Dongqing PAN, Tomohiko OKUDA, Michihiro SUGAHARA, Atsushi KODAN, Tomohiro YAMAGUCHI, Tomohiro MURAI, Keiko GOMI, Naoki KAJIYAMA, Eiichi MIZOHARA, Mamoru SUZUKI, Eriko NANGO, Kensuke TONO, Yasumasa JOTI, Takashi KAMESHIMA, Jaehyun PARK, Changyong SONG, Takaki HATSUI, Makina YABASHI, So IWATA, Hiroaki KATO, Hideo AGO, Masaki YAMAMOTO, Toru NAKATSU
An isomorphous replacement method for efficient de novo phasing for serial femtosecond crystallography
Scientific Reports, 5, 14017 (2015)
Hidekazu TSUTSUI, Yuka JINNO, Keiko SHODA, Akiko TOMITA, Makoto MATSUDA, Eiki YAMASHITA, Hiroyuki KATAYAMA, Atsushi NAKAGAWA & Atsushi MIYAWAKI
A Diffraction-Quality Protein Crystal Processed as an Autophagic Cargo
Molecular Cell, 58(1), 186-193 (2015)
2014
Y. ANDOH, N. YOSHII, A. YAMADA, K. FUJIMOTO, H. KOJIMA, K. MIZUTANI, A. NAKAGAWA, A. NOMONO & S. OKAZAKI
All-atom molecular dynamics calculation study of entire poliovirus empty capsids in solution
Journal of Chemical Physics 141, 165101 (2014)
Ken-ichi KOSAMI, Izuru OHKI, Minoru NAGANO, Kyoko FURUITA, Toshihiko SUGIKI, Yoji KAWANO, Tsutomu KAWASAKI, Toshimichi FUJIWARA, Atsushi NAKAGAWA, Ko SHIMAMOTO & Chojiro KOJIMA
The Crystal Structure of the Plant Small GTPase OsRac1 Reveals Its Mode of Binding to NADPH Oxidase
Journal of Biological Chemistry, 289(41), 28569-28578(2014)
Kohei TAKESHITA, Souhei SAKATA, Eiki YAMASHITA, Yuichiro FUJIWARA, Akira KAWANABE, Tatsuki KUROKAWA, Yoshifumi OKOCHI, Makoto MATSUDA, Hirotaka NARITA, Yasushi OKAMURA & Atsushi NAKAGAWA
X-ray crystal structure of voltage-gated proton channel
Nature Structural & Molecular Biology 21, 352–357 (2014) PubMed
Ahmet Can BERKYUREK, Isao SUETAKE, Kyohei ARITA, Kohei TAKESHITA, Atsushi NAKAGAWA, Masahiro SHIRAKAWA, Shoji TAJIMA
The DNA Methyltransferase Dnmt1 Directly Interacts with the SET and RING Finger-associated (SRA) Domain of the Multifunctional Protein Uhrf1 to Facilitate Accession of the Catalytic Center to Hemi-methylated DNA
Journal of Biological Chemistry, 289, 379-386 (2014)
Kunio HIRATA, Kyoko SHINZAWA-ITOH, Naomine YANO, Shuhei TAKEMURA, Koji KATO , Miki HATANAKA, Kazumasa MURAMOTO, Takako KAWAHARA, Tomitake TSUKIHARA, Eiki YAMASHITA
Determination of damage-free crystal structure of an X-ray-sensitive protein using an XFEL
NATURE METHODS 11, 734-U174 (2014)
Hiroko KOBAYASHI, Takuya KATSUTANI, Yumiko HARA, Naomi MOTOYOSHI, Tadashi ITAGAKI, Fusamichi AKITA, Akifumi HIGASHIURA, Yusuke YAMADA, Norio INOKUCHI, Mamoru SUZUKI
X-Ray Crystallographic Structure of RNase Po1 That Exhibits Antitumor Activity
BIOLOGICAL & PHARMACEUTICAL BULLETIN 37,968-978 (2014)
Rieko KOJIMA, Masaki OKUMURA, Shoji MASUI, Shingo KANEMURA, Michio INOUE, Masatoshi SAIKI, Hiroshi YAMAGUCHI, Takaaki HIKIMA, Mamoru SUZUKI ,Shuji AKIYAMA, Kenji INABA
Radically Different Thioredoxin Domain Arrangement of ERp46, an Efficient Disulfide Bond Introducer of the Mammalian PDI Family
Structure. 2014 Jan 22. pii: S0969-2126(14)00004-5. doi: 10.1016
Ken-ichi KOSAMI, Izuru OHKI, Kokoro HAHASHI, Ryo TABATA, Sayaka USUGI, Tsutomu KAWASAKI, Toshimichi FUJIWARA, Atsushi NAKAGAWA, Ko SHIMAMOTO, Chojiro KOJIMA
Purification, crystallization and preliminary X-ray crystallographic analysis of a rice Rac/Rop GTPase, OsRac1
ACTA CRYSTALLOGRAPHICA SECTION F-STRUCTURAL BIOLOGY AND YSTALLIZATION COMMUNICATIONS 70, 113-115 (2014).
Saehae CHOI, Eiki YAMASHITA, Noriko YASUHARA, Song J , Se-Young Son, Young HanStructural basis for the selective nuclear import of the C2H2 zinc-finger protein Snail by importin betaWON, Hye Rim HONG, Yoon Sik SHIN, Toshihiro SEKIMOTO, Il Yeong PARK
ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY 70, 1050-1060 (2014)
Francois-Xavier GALLAT , Naohiro MATSUGAKI, Nathan P. COUSSENS, Koichiro YAGI, J.Boudes Marion, Tetsuya HIGASHI, Daisuke TSUJI, Yutaka TATANO, Mamoru SUZUKI, Eiichi MIZOHATA
In vivo crystallography at X-ray free-electron lasers: the next generation of structural biology?
PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES 369,1647 (2014)
2013
Akifumi HIGASHIURA, Kazunori OHTA, Mika MASAKI, Masaru SATO, Koji INAKA, Hiroaki TANAKA, and Atsushi NAKAGAWA
High-resolution X-ray crystal structure of bovine H-protein using the high-pressure cryocooling method
Journal of Synchrotron Radiation, 20, 989-993 (2013)
Hiroyuki SASANUMA, Maki S.TAWARAMOTO, Jessica P. LAO, Harumi HOSAKA, Eri SANDA, Mamoru SUZUKI, Eiki YAMASHITA, Neil HUNTER, Miki SHINOHARA, Atsushi NAKAGAWA, and Akira SHINOHARA
A new protein complex promoting the assembly of Rad51 filaments
Nature Communications, 4, 1676 (2013）
Atsushi INANOBE, Atsushi NAKAGAWA, and Yoshihisa KURACHI
Conformational changes underlying pore dilation in the cytoplasmic domain of mammalian inward rectifier K+ channels
PLOS ONE, 8(11), e79844 (2013)
Kohji YAMAMOTO, Akifumi HIGASHIURA, Mamoru SUZUKI, Kousuke ARITAKE, Yoshihiro URADE, Nobuko UODOME, and Atsushi NAKAGAWA
Crystal structure of a Bombyx mori sigma-class glutathione transferase exhibiting prostaglandin E synthase activity
Biochimica et Biophysica Acta – Proteins and Proteoics, 1830(6), 3711-3718 (2013)
Saehae CHOI, Jinsue SONG, Se-Young SON, Il Yeong PARK, Eiki YAMASHITA, and Soo Jae LEE
Crystallization and preliminary X-ray diffraction analysis of human importin beta-Snail zinc finger domain complex
Acta Crystallographica Section F,69, 1049-1051 (2013)
Yuichiro FUJIWARA, Tatsuki KUROKAWA, Kohei TAKESHITA, Atsushi NAKAGAWA, Larsson, H. PETER, and Yasushi OKAMURA
Gating of the designed trimeric/tetrameric voltage-gated H+ channel
Journal of Physiology-London,591, 627-640 (2013)
Hiroaki TANAKA, Ken-ichi AKAGI, Chitose ONEYAMA, Masakazu TANAKA, Yuichi SASAKI, Takashi KANOU, Young-Ho LEE, Daisuke YOKOGAWA, Marc-Werner DOBENECKER, Atsushi NAKAGAWA, Masato OKADA, and Takahisa IKEGAMI
Identification of a new interaction mode between the src homology 2 domain of c-terminal src kinase (csk) and csk-binding protein/phosphoprotein associated with glycosphingolipid microdomains
Journal of Biological Chemistry, 288, 15240-15254 (2013)
Syed Saif HASAN, Jason T. STOFLETH, Eiki YAMASHITA, and William A. CRAMER
Lipid-induced conformational changes within the cytochrome b6f complex of oxygenic photosynthesis
Biochemistry, 52, 2649-2654 (2013)
Kohji YAMAMOTO, Mamoru SUZUKI, Akifumi HIGASHIURA, Kousuke ARITAKE, Yoshihiro URADE, Nobuko UODOME, Tofazzal HOSSAIN, and Atsushi NAKAGAWA
New insights into the catalytic mechanism of Bombyx mori prostaglandin E synthase gained from structure-function analysis
Biochemical and Biophysical Research Communications, 440, 762-767 (2013)
Syed Saif HASAN, Eiki YAMASHITA, Danas BANIULIS, and William A. CRAMER
Quinone-dependent proton transfer pathways in the photosynthetic cytochrome b6fcomplex
Proceedings of the National Academy of Sciences of the United States of America,110, 4297-4302 (2013)
Yuichiro FUJIWARA, Kohei TAKESHITA, Atsushi NAKAGAWA, and Yasushi OKAMURA
Structural characteristics of the redox-sensing coiled coil in the voltage-gated H+ channel
Journal of Biological Chemistry,288, 17968-17975 (2013)
Phimonphan CHUANKHAYAN, Tsengl-Ting KAO, Chien-Chih LIN, Hong-Hsiang GUAN, Atsushi NAKAGAWA, Tzu-Fun FU, and Chun-Jung CHEN
Structural insights into the hydrolysis and polymorphism of methotrexate polyglutamate by zebrafish g-glutamyl hydrolase
Journal of Medicinal Chemistry, 56, 7625-7635 (2013)
S. Saif HASAN, Eiki YAMASHITA, and William A. CRAMER
Transmembrane signaling and assembly of the cytochrome b6f-lipidic charge transfer complex
Biochemica et Biophysica Acta – Bioenergetics, 1827, 1295-1308 (2013)
Naoyuki MIYAZAKI, Fusamichi AKITA, Atsushi NAKAGAWA, Kazuyoshi MURATA, Toshihiro OMURA, and Kenji IWASAKI
Cryo-electron tomography: moving towards revealing the viral life cycle of Rice dwarf virusJournal of Synchrotron Radiation, 20, 826-828 (2013)
Naoyuki MIYAZAKI, Atsushi NAKAGAWA, and Kenji IWASAKI
Life cycle of phytoreoviruses visualized by electron microscopy and tomography
Frontiers in Microbiology, 4, Article 306, 1-9
Takeshi MURAKAWA, Hideyuki HAYASHI, Tomoko SUNAMI, Kazuo KURIHARA, Taro TAMADA, Ryota KUROKI, Mamoru SUZUKI, Katsuyuki TANIAZAWA, and Toshihide OKAJIMA
High Resolution Crystal Structure of Copper Amine Oxidase from Arthrobacter globiformis: Identification of BoundO2-like Diatomic Molecules.
Acta Crystallographica Section D, 69, 2483-2494 (2013)
Chavas LM, Matsugaki N, Yamada Y, Hiraki M, Igarashi N, Suzuki M, Wakatsuki S.
10 years of protein crystallography at AR-NW12A beamline.
J. Phys.: Conf. Ser. 425, 012008 (2013)
Sato, Y., Kojima, R., Okumura, M., Hagiwara, M., Masui, S., Maegawa, K., Saiki, M., Horibe, T., Suzuki, M., Inaba, K.
Synergistic cooperation of PDI family members in peroxiredoxin 4-driven oxidative protein folding.
Scientific Reports 3, 2456 (2013)
Yamamoto K, Suzuki M, Higashiura A, Nakagawa A.
Three-dimensional structure of a Bombyx mori Omega-class glutathione transferase.
Biochim Biophys Acta. (2013)
Harada K, Yamashita E, Nakagawa A, Miyafusa T, Tsumoto K, Ueno T, Toyama Y, Takeda S.
Crystal structure of the C-terminal domain of Mu phage central spike and functions of bound calcium ion.
Biochim Biophys Acta, 1834, 284-291 (2013)
2012
Takeshita K, Tezuka T, Isozaki Y, Yamashita E, Suzuki M, Kim M, Yamanashi Y, Yamamoto T, Nakagawa A.
Structural flexibility regulates phosphopeptide-binding activity of the tyrosine kinase binding domain of Cbl-c
J. Biochem, 152, 487-495 (2012)
Zakharov SD, Sharma O, Zhalnina M, Yamashita E, Cramer WA.
Pathways of colicin import: utilization of BtuB, OmpF porin and the TolC drug-export protein
BIOCHEMICAL SOCIETY TRANSACTIONS, 40, 1463-1468 (2012)
Sasaki H, Kubota K, Lee WC, Ohtsuka J, Kojima M, Iwata S, Nakagawa A, Takahashi K, Tanokura M.
The crystal structure of an intermediate dimer of aspergilloglutamic peptidase that mimics the enzyme-activation product complex produced upon autoproteolysis
JOURNAL OF BIOCHEMISTRY, 152, 45-52 (2012)
Kihira K, Shimizu Y, Shomura Y, Shibata N, Kitamura M, Nakagawa A, Ueda T, Ochi K, Higuchi Y.
Crystal structure analysis of the translation factor RF3 (release factor 3)
FEBS LETTERS, 586, 3705-3709 (2012)
Zhao H, Konishi A, Fujita Y, Yagi M, Ohata K, Aoshi T, Itagaki S, Sato S, Narita H, Abdelgelil NH, Inoue M, Culleton R, Kaneko O, Nakagawa A, Horii T, Akira S, Ishii KJ, Coban C.
Lipocalin 2 Bolsters Innate and Adaptive Immune Responses to Blood-Stage Malaria Infection by Reinforcing Host Iron Metabolism
CELL HOST & MICROBE, 12, 705-716 (2012)
Fujihashi, M. Hiraki, M., Ueno, G. Baba, S., Murakami, H., Suzuki, M., Watanabe, N., Tanaka, I., Nakagawa, A. Wakatsuki, S. Yamamoto, M. and Miki, K.
Crystal sample pins and a storage cassette system compatible with the protein crystallography beamlines at both the Photon Factory and SPring-8
J. Appl. Cryst., 45, 1156-1161 (2012)
Yamamoto, K., Usuda, K., Kakuta, Y., Makoto Kimura, M., Higashiura, A., Nakagawa, A., Suzuki, M.
Structural basis for catalytic activity of a silkworm Delta-class glutathione transferase
1820, 1469-1470 (2012)
Chavas LM, Matsugaki N, Yamada Y, Hiraki M, Igarashi N, Suzuki M, Wakatsuki S
Beamline AR-NW12A: high-throughput beamline for macromolecular crystallography at the Photon Factory
J Synchrotron Radiat., 19, 450-454 (2012)
Fujiwara Y, Kurokawa T, Takeshita K, Kobayashi M, Okochi Y, Nakagawa A, Okamura Y.
The cytoplasmic coiled-coil mediates cooperative gating temperature sensitivity in the voltage-gated H(+) channel Hv1
Nature Communications, 3, 816 (2012)
Akira KINJO, Hirofumi SUZUKI, Reiko YAMASHITA,Yasuyo IKEGAWA, Takahiro KUDOU, Teiko IGARASHI, Yumiko KENGAKU, Hasumi CHO, Daron M. STANDLEY,Atsushi NAKAGAWA, Haruki NAKAMURA
Protein Data Bank Japan (PDBj): maintaining a structural data archive and resource description framework format
NUCLEIC ACIDS RESEARCH, 40, D453-D460 (2012)
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JOURNAL OF PHARMACOLOGICAL SCIENCES, 118, 69-69 (2012)